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Created with Raphaël 2.2.016Nov15141312109865432131Oct302928262524232221201918171615121110985432128Sep272524232019181714121110976543131Aug302928272625242322212017161514131210Merge pull request #1209 from pdebuyl/fix_cmake_h5mdUpdate Colvars library to version 2018-11-16fix cmake build for USER-H5MDMerge pull request #1207 from akohlmey/next-patch-releaseMerge pull request #1206 from akohlmey/collected-small-changesfix some minor bugs write data file writing and remove dead code and silence compiler warningsremove dead code and silence compiler warningsOpenMP support from the compiler is not a requirement for USER-OMP. Without OpenMP, it is like the OPT package but for many more styles, so it is still useful and should be supported.complete workflow documentMerge pull request #1204 from lammps/doc-plumedMerge pull request #1201 from junghans/cmake_docincomplete first draft. committed for checking the markup in github.Update README.mdadd detailed build instructions and discussion of linkage modes for PLUMED library and USER-PLUMED packagereformatting and simplification of fix plumed docsinterlink fixes colvars, plumed, and smdcorrect some linkspatch 15Nov2018Merge pull request #33 from lammps/mastermake @gtribello code owner of the USER-PLUMED packagesupport all three plumed linkage modes with CMake as well. For downloaded and previously installed plumed libadd code and scripts to support all three plumed linkage modes with fix plumed for conventional buildadd comment to indicate code intended for backward compatibility onlyuse memset() for clearing of arrayscheck only in currently added data file atoms for dihedral overflowuse tagint when unpacking atom tags from communication buffersMerge pull request #1197 from akohlmey/collected-small-fixesMerge pull request #1202 from lammps/hyperMerge pull request #1203 from stanmoore1/kk_updatedoc page additions for USER-PLUMED packageremove some debugging codecorrect broken links detected by make mobicorrect broken links in manual reported by 'make html'remove dead code and silence warnings about unused parameterssilence compiler warningsavoid void return from non-void functionc++ style include files do not have a .h extensionremove accidentally duplicated codeadded new commands to doc pages, fixed a few missing entries as wellRemove deprecated Kokkos code