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Created with Raphaël 2.2.09Nov865432131Oct302928262524232221201918171615121110985432128Sep272524232019181714121110976543131Aug30292827262524232221201716151413121098update presets for USER-PLUMED package. fix typo.replace faulty preprocessor logicMerge pull request #1198 from akohlmey/next-patch-releaseMerge pull request #1184 from DiscreteLogarithm/sdpdpatch 9Nov2018Merge branch 'master' into sdpd to resolve merge conflictsMerge pull request #1195 from jrgissing/bond/react-custom_edgesMerge pull request #1180 from gtribello/masterMerge pull request #1191 from akohlmey/msi2lmp-avoid-bad-topologyMerge pull request #1182 from junghans/pkgconfig_docinclude USER-SDPD package in list of user packages in conventional makereplace non-ASCII charactersimprove logic and grammar of error messagesremove bogus single function and set single_enable = 0remove dead code and avoid compiler warningsuse c++ style include files for c-library functionsignore USER-SDPD files when installedbond/react: allow custom update of charges near template edgesMerge pull request #32 from lammps/masterMerge pull request #1194 from ohenrich/user-cgdnaMerge branch 'master' into user-cgdnaUpdated link to preprint articleMerge pull request #1189 from jrgissing/bond/react-custom_groupMerge pull request #1192 from julient31/masterupdate referenceMerge pull request #31 from lammps/masterdo not generate illegal dihedrals, e.g. from 3-membered ringscmake: switch plumed to full static modecmake: fix linking again plumedcorrection to fix group property docbroke smooth restarts at some point. fixedvarious small changes and reformattingAdded check on fix modify for PLUMED to ensures that virial is calculated for group allAdded functionality to support fix modify for fix plumedAdded functionality to throw error when time step changes and PLUMED is being usedGot rid of some of the hard-coded units in the plumed interfaceupdate bond/react examplesbond/react: convert group-ID to group-ID-prefixdownload only the plumed-src package and include further tweaks to be compatible with plumed 2.5bprovide reference logfiles and move generated files to reference folder