Run latexmk twice, with and without appendix

.gitlab-ci.yml

@@ -11,6 +11,8 @@ build:
     - sage -pip install "pseudowalls==0.0.3" --extra-index-url https://gitlab.com/api/v4/projects/43962374/packages/pypi/simple
     - make tilt.rs
     - latexmk -use-make
+    - sed -i -e '1s/^/\\def\\notebookappendix{}/' main.tex
+    - latexmk -use-make
   artifacts:
     paths:
       - main.pdf

latexmkrc

 ensure_path("TEXINPUTS","edinburgh-math-latex/");
 @default_files = ('main.tex');
 $pdf_mode = 1;
-$pdflatex = 'lualatex -shell-escape -interaction=nonstopmode';
+$pdflatex = 'lualatex -shell-escape -interaction=nonstopmode %O %S';
 $max_repeat = 8;
 @generated_exts = (@generated_exts, 'synctex.gz');