To install, please use poetry https://python-poetry.org/ First, clone the repository >>> git clone https://git.ecdf.ed.ac.uk/pswain/omniplate.git ompkg then >>> cd ompkg/code and run >>> poetry install There is a jupyter notebook of an illustrative workflow, which was used to generate https://swainlab.bio.ed.ac.uk/software/omniplate/omniplate.html and requires the data in the data folder to do so. The notebook assumes that you have added ompkg/code to your PYTHONPATH, but you could instead move the notebook and data folder to the code folder. Calibration data for correcting the optical density of budding yeast is in the odcorrection folder. The data for haploids in glucose is hard coded into the software.
pswain
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