Improved the binary classification substantially using parameter optimisation

pyRBDome_analyses/ground_truth_notebooks/8.5_Cross_linking_site_analyses.ipynb

@@ -40,7 +40,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 3,
    "id": "d45d3737",
    "metadata": {},
    "outputs": [],
@@ -58,7 +58,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 4,
    "id": "13dc7bc0",
    "metadata": {},
    "outputs": [
@@ -68,7 +68,7 @@
        "'pyrbdome_full.db'"
       ]
      },
-     "execution_count": 7,
+     "execution_count": 4,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -79,7 +79,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 5,
    "id": "3e5a368c",
    "metadata": {},
    "outputs": [
@@ -89,7 +89,7 @@
        "'Experimental_and_Ground_Truth_data'"
       ]
      },
-     "execution_count": 8,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -100,7 +100,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 6,
    "id": "aa51befb",
    "metadata": {},
    "outputs": [
@@ -118,7 +118,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 7,
    "id": "b2c4d4ab",
    "metadata": {},
    "outputs": [
@@ -266,7 +266,7 @@
        "4       NaN         NaN  NaN  "
       ]
      },
-     "execution_count": 10,
+     "execution_count": 7,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -285,7 +285,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 8,
    "id": "6a520ffe",
    "metadata": {},
    "outputs": [],
@@ -295,7 +295,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 9,
    "id": "ce57ebf9",
    "metadata": {},
    "outputs": [
@@ -443,7 +443,7 @@
        "7316         0.0       0.0         1.0  1.0  "
       ]
      },
-     "execution_count": 13,
+     "execution_count": 9,
      "metadata": {},
      "output_type": "execute_result"
     }