Commits · b2fea00a73819b3c01b90c8d6c65396dc89f9e21 · sgrannem / pyRBDome-Notebooks - Ground truth analyses · GitLab

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Feb 01, 2024
- Added updated code that was used for training the XGBoost model described in the paper · b2fea00a
  sgrannem authored 1 year ago
  
  b2fea00a
- Added updated code that was used for training the XGBoost model described in the paper · a91f7b49
  sgrannem authored 1 year ago
  
  a91f7b49
- Replaced 2.0_GetPST-PRNA.ipynb with a debugged version · 5f995840
  sgrannem authored 1 year ago
  
  5f995840
Dec 03, 2023
- bugfixes and added new combined results file · 96eecd3d
  openngs2 authored 1 year ago
  
  96eecd3d
Nov 29, 2023
- Version 1.1.3. Added HydRa model and cleaned up the repository · 955e3675
  openngs2 authored 1 year ago
  
  v1.1.3
  
  955e3675
Nov 27, 2023
- Reorganised the repository and added a much improved README.md file · a1afbda8
  openngs2 authored 1 year ago
  
  a1afbda8
Nov 22, 2023
- Added new statistica analyses and prediction models · 79c07de6
  openngs2 authored 1 year ago
  
  v.1.1.1
  
  79c07de6
Nov 09, 2023
- Added more FTMap data and fixed a bug in notebook 4 · 22e7f0f6
  openngs2 authored 1 year ago
  
  22e7f0f6
Oct 31, 2023
- Changes for version 1.1. Many improvements to the notebook. Removed redundant code · 5ffd6898
  openngs2 authored 1 year ago
  
  v1.1
  
  5ffd6898
Oct 29, 2023
- Added PST_PRNA prediction data and retrained models · 52ee71a5
  openngs2 authored 1 year ago
  
  v0.1
  
  52ee71a5
Oct 22, 2023
- more improvements · e3d67fa8
  openngs2 authored 1 year ago
  
  e3d67fa8
Oct 19, 2023
- Improvements to the code and added more figures · 73882d54
  openngs2 authored 1 year ago
  
  73882d54
Oct 16, 2023
- Added prediction pdb files and sorted notebooks · f09c1c67
  openngs2 authored 1 year ago
  
  f09c1c67
Oct 14, 2023
- Added domain data, scorebar pdf files and pymol sessions for visualising the... · 2c540f4f
  openngs2 authored 1 year ago
  
  Added domain data, scorebar pdf files and pymol sessions for visualising the results stored in pdb files
  2c540f4f
Sep 24, 2023
- Added improved binary classifier notebook · 408f792b
  openngs2 authored 1 year ago
  
  408f792b
Sep 16, 2023
- Added more XGBoost models · 044cddd8
  openngs2 authored 1 year ago
  
  044cddd8
Sep 14, 2023
- vastly improved the XGBoost models and made models for different combinations of predictors · cba3f863
  openngs2 authored 1 year ago
  
  cba3f863
Aug 23, 2023
- Fixed a bug that prevented chromedriver from working properly · c2f866ed
  openngs2 authored 1 year ago
  
  c2f866ed
- Improved notebook 8.5. Added more results pdf files · 146b15a7
  openngs2 authored 1 year ago
  
  146b15a7
Aug 21, 2023
- Minor bug fixes and more data · a7dfc1a9
  openngs2 authored 1 year ago
  
  a7dfc1a9
Aug 18, 2023
- Added score bars for each protein and fixed a bug in notebook 4 · 6674b89a
  openngs2 authored 1 year ago
  
  6674b89a
Aug 16, 2023
- Added all the HydRa results · 1c1484fe
  openngs2 authored 1 year ago
  
  1c1484fe
Aug 15, 2023
- Finalised the binary classification model · 3639c3eb
  openngs2 authored 1 year ago
  
  3639c3eb
- Added HydRa data · 04d836fc
  openngs2 authored 1 year ago
  
  04d836fc
Aug 14, 2023
- Added the last FTMap results, updated the distance analyses and generated ROC... · a394b848
  openngs2 authored 1 year ago
  
  Added the last FTMap results, updated the distance analyses and generated ROC curves and precision recall plots
  a394b848
- Improved the binary classification substantially using parameter optimisation · 9418ec2d
  openngs2 authored 1 year ago
  
  9418ec2d
- Added table where the experimental data is compare to the ground truth data · 2784c072
  openngs2 authored 1 year ago
  
  2784c072
Aug 13, 2023
- Added a table containing all the combined results · a940a99d
  openngs2 authored 1 year ago
  
  a940a99d
- Added results from the statistical analyses · abf036ba
  openngs2 authored 1 year ago
  
  abf036ba
- First commit. Pipeline almost running completely without errors · d01923ce
  openngs2 authored 1 year ago
  
  d01923ce