pyRBDome_analyses/ground_truth_notebooks · 510833c9112f14ba3f3caebe3c9b906c5583788e · sgrannem / pyRBDome-Notebooks

openngs2 authored 1 year ago

955e3675

Name	Last commit	Last update
..
.ipynb_checkpoints
old_models
xgboost_models
1.0_FindRNPStructures_using_Uniprot_ID.ipynb
1.1_ConnectPDBs.ipynb
1.2_GetPfamDomains.ipynb
1.3_InSilicoDigestionOfProteins.ipynb
1.4_Generate_random_peptide_datasets.ipynb
2.0_GetPST-PRNA.ipynb
2.1_GetaaRNAData.ipynb
2.2_GetBindUPData.ipynb
2.3_GetFTMapData.ipynb
2.4_GetHydraPredictionData.ipynb
2.5_GetRNABindRPlusdata.ipynb
2.6_GetDisoRDPbinddata.ipynb
3.0_MapPeptidesToStructures.ipynb
4.0_ProcessResultsFiles.ipynb
5.0_Gathering_All_results.ipynb
6.0_RBDTripeptideMotifsAndProperties.ipynb
6.1.1_BinaryClassifierAnalysesPLIPData.ipynb
6.1.2_BinaryClassifierAnalysesRBDData.ipynb
6.2_RBSPredictionAnalysis.ipynb
6.3_Predictions_vs_Ground_truth_comparison.ipynb
6.4_Cross-linking_vs_Ground_truth_comparison.ipynb
7.1_DrawPredictionScoreBarPlot.ipynb
7.2_MakeMergedPymolSession.ipynb
GroundTruthUniProtIDs.txt
Pfam-A.clans.tsv
ProteinBERT_TrainWithWholeProteinSet_defaultSetting_ModelFile.pkl
pyrbdome_full.db
settings.yaml