analysis_results · main · sgrannem / pyRBDome-Notebooks

sgrannem authored 8 months ago

1a4a1454

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.ipynb_checkpoints
HydRa_results
Interproscan_results
RNABindRPlus_results
fasta_files
All_combined_results.txt
Amino_acids_away_from_PLIP_sites.pdf
Amino_acids_away_from_sites_within_4.2A_from_RNA.pdf
Amino_acids_involved_in_pistacking.pdf
Combination_models_average_precision_scores.pdf
Combination_models_average_precision_scores_PLIP.pdf
Combination_models_average_precision_scores_pocket.pdf
Combination_models_roc_AUC_scores.pdf
Combination_models_roc_AUC_scores_PLIP.pdf
Combination_models_roc_AUC_scores_pocket.pdf
Cross_linked_amino_acids_vs_Shuffled_and_Total_PLIP_data_ecdf_plot.pdf
Cross_linked_amino_acids_vs_Shuffled_and_Total_ecdf_plot.pdf
Cross_linked_peptides_vs_random_trypsin_lys_C_PLIP_distances_ecdf_plot.pdf
Cross_linked_peptides_vs_random_trypsin_lys_C_RNA_distances_ecdf_plot.pdf
Cumulative_plot_BindUP_distances.pdf
Cumulative_plot_DisoRDPbind_distances.pdf
Cumulative_plot_FTMap_distances.pdf
Cumulative_plot_Ground_truth_distances.pdf
Cumulative_plot_Ground_truth_distances_individual_interactions.pdf
Cumulative_plot_PLIP_distances.pdf
Cumulative_plot_PST_PRNA_distances.pdf
Cumulative_plot_RNABindRPlus_distances.pdf
Cumulative_plot_aaRNA_distances.pdf
DisoRDPbind_results.txt
DisoRDPbind_results_08_08_2023_14_48.txt
DisoRDPbind_to_upload_08_08_2023_14_48.fasta
DisoRDPbind_to_upload_09_08_2023_17_24.fasta
DisoRDPbind_to_upload_23_11_2023_19_25.fasta
Distance_Confusion_Matrix_BindUP_data.pdf
Distance_Confusion_Matrix_DisoRDPbind_data.pdf
Distance_Confusion_Matrix_Distance_to_RNA_data.pdf
Distance_Confusion_Matrix_FTMap_distances_data.pdf
Distance_Confusion_Matrix_HydRa_data.pdf
Distance_Confusion_Matrix_PST_PRNA_data.pdf
Distance_Confusion_Matrix_RNABindRPlus_data.pdf
Distance_Confusion_Matrix_aaRNA_data.pdf
Distance_analyses_Tool_performance_metrics.pdf
Distance_away_from_sites_within_4.2A_from_RNA.pd.pdf
Experimental_and_Ground_Truth_data.txt
Feature_Importance_Analysis_PLIP_data.pdf
Feature_Importance_Analysis_pocket_data.pdf
Features_p_values.txt
InterProScanPfam_results.txt
Interaction_types_pie_chart.pdf
Interaction_types_pie_chart_4Angstrom.pdf
Motif_p_values.txt
PLIP_Confusion_Matrix_BindUP_data.pdf
PLIP_Confusion_Matrix_DisoRDPbind_data.pdf
PLIP_Confusion_Matrix_Distance_to_RNA_data.pdf
PLIP_Confusion_Matrix_FTMap_distances_data.pdf
PLIP_Confusion_Matrix_HydRa_data.pdf
PLIP_Confusion_Matrix_PST_PRNA_data.pdf
PLIP_Confusion_Matrix_RNABindRPlus_data.pdf
PLIP_Confusion_Matrix_aaRNA_data.pdf
PLIP_Tool_performance_metrics.pdf
PLR_vs_sensitivity_plot.pdf
PLR_vs_sensitivity_plot_PLIP.pdf
PLR_vs_sensitivity_plot_pocket.pdf
PR_HydRa_PLIP_results.pdf
PR_HydRa_pocket_results.pdf
P_value_distribution_heatmap_analyses_RNA_binding_peptides_vs_random.pdf
P_value_distribution_heatmap_analyses_RNA_binding_peptides_vs_random_split_distance.pdf
P_value_distribution_heatmap_analyses_RNA_binding_peptides_vs_trypsin_lys_C.pdf
P_value_distribution_heatmap_analyses_RNA_binding_peptides_vs_trypsin_lys_C_split_distance.pdf
P_values_for_different_distances_RNA_binding_peptides_vs_random_log_file.txt
P_values_for_different_distances_RNA_binding_peptides_vs_random_split_distance_log_file.txt
P_values_for_different_distances_RNA_binding_peptides_vs_trypsin_lys_C_log_file.txt
P_values_for_different_distances_RNA_binding_peptides_vs_trypsin_lys_C_split_distance_log_file.txt
P_values_hypergeometric_tests_RNA_binding_peptides_vs_random.txt
P_values_hypergeometric_tests_RNA_binding_peptides_vs_random_split_distance.txt
P_values_hypergeometric_tests_RNA_binding_peptides_vs_trypsin_lys_C.txt
P_values_hypergeometric_tests_RNA_binding_peptides_vs_trypsin_lys_C_split_distance.txt
Precision_Recall_analyses_all_combinations.pdf
Precision_Recall_analyses_all_combinations_PLIP.pdf
Precision_Recall_analyses_all_combinations_pockets.pdf
Precision_Recall_analyses_all_features_PLIP.pdf
Precision_Recall_analyses_all_features_pocket.pdf
Precision_Recall_analyses_all_features_pocket_second_model.pdf
Proteins_to_analyse_by_interproscan.fasta
Proteins_to_analyse_by_interproscan.fasta.tsv
ROC_HydRa_PLIP_results.pdf
ROC_HydRa_pocket_results.pdf
ROC_curve_analysis_all_combinations_PLIP.pdf
ROC_curve_analysis_all_combinations_pockets.pdf
ROC_curve_analysis_all_features_PLIP.pdf
ROC_curve_analysis_all_features_pocket.pdf
ROC_curve_analysis_all_features_pocket_second_model.pdf
Test_data_with_predictions_for_performance_analysis.txt
Tool_Combination_Heatmap_pockets.pdf
Tool_Importance_vs_Tool_value_PLIP_data.pdf
Tool_Importance_vs_Tool_value_data.pdf
Tool_Importance_vs_Tool_value_pocket_data.pdf
Tool_combination_heatmap_PLIP.pdf
Training_errors_plot.pdf
Training_errors_plot_PLIP.pdf