Commits · master · sgrannem / pyCRAC

Jan 22, 2025
- Minor bug fix in the GTF2 parser that prevented the printing the gtf... · 69b4b716
  sgrannem authored 1 month ago
  
  Minor bug fix in the GTF2 parser that prevented the printing the gtf dictionary to a GTF output file
  69b4b716
Sep 11, 2024
- Update file pyCalculateFDRs.py · b841bd7a
  sgrannem authored 6 months ago
  
  b841bd7a
Apr 17, 2023
- Fixed a bug that prevented pybed2GTF from working properly · de740c51
  sgrannem authored 1 year ago
  
  de740c51
Mar 17, 2023
- Update pyCRAC/Parsers/GTF2.py · ff15ea9d
  sgrannem authored 1 year ago
  
  ff15ea9d
Jul 16, 2022
- Update README.md · ecbdd17c
  sgrannem authored 2 years ago
  
  ecbdd17c
Aug 17, 2021
- Header in pyGTF2Fasta.py now reports 1-based inclusive chromosome coordinates in the header · 35b9cb74
  sgrannem authored 3 years ago
  
  35b9cb74
Aug 15, 2021
- Fixed a bug that prevented pyGTF2Fasta from running properly · 59693406
  sgrannem authored 3 years ago
  
  59693406
- minor fixes · a56ae5b9
  sgrannem authored 3 years ago
  
  a56ae5b9
- Major changes to the GTF2 and NGSFileWriter/Reader code to make it easier to... · 5fbfad5d
  sgrannem authored 3 years ago
  
  Major changes to the GTF2 and NGSFileWriter/Reader code to make it easier to understand how gene coordinates are being used. See VERSION.txt for more details
  1.5.2
  
  5fbfad5d
Jul 16, 2021
- Fixed a bug in the FDR.py class that prevented it from using data from a negative control dataset · 2b51b569
  Sander Granneman authored 3 years ago
  
  2b51b569
Jul 13, 2021
- Update FDR.py · db306c86
  sgrannem authored 3 years ago
  
  db306c86
- Update FDR.py · 0fcf4711
  sgrannem authored 3 years ago
  
  0fcf4711
May 17, 2021
- Update LICENSE.txt · 249eb7c3
  sgrannem authored 3 years ago
  
  249eb7c3
- Update LICENCE.txt · 8a6a2e4e
  sgrannem authored 3 years ago
  
  8a6a2e4e
- Fixed a bug in the setup.py that prevented the package from being installed under Python 3.8 · 70e0afc8
  sgrannem authored 3 years ago
  
  70e0afc8
- Update README.md · 20d64855
  sgrannem authored 3 years ago
  
  20d64855
- Update README.md · 5ef0d243
  sgrannem authored 3 years ago
  
  5ef0d243
- Update README.md · 48773526
  sgrannem authored 3 years ago
  
  48773526
Dec 06, 2020
- Version 1.5.0. Minor synthax and bug fixes. · 5dcf5526
  Sander Granneman authored 4 years ago
  
  2 tags
  
  5dcf5526
Jun 22, 2020
- Version 1.4.8 · 34cc0084
  sgrannem authored 4 years ago
  
  34cc0084
- fixed a small bug in pyGTF2bed.py which truncated the intervals by 1nt. Added... · 03b803d0
  sgrannem authored 4 years ago
  
  fixed a small bug in pyGTF2bed.py which truncated the intervals by 1nt. Added a useful function to pyCRAC.Methods
  03b803d0
Mar 08, 2020
- Improved pyCalculateFDRs. Now reports peak heights and FDR for peak · ea401f15
  sgrannem authored 5 years ago
  
  ea401f15
Oct 15, 2019
- Made minor improvements to several scripts · c9bc5c5f
  sgrannem authored 5 years ago
  
  c9bc5c5f
Jul 16, 2019
- Fixed a bug in Coverage and pyBinCollector that caused problems with short UTRs · ca755e1c
  sgrannem authored 5 years ago
  
  ca755e1c
Jul 15, 2019
- minor fix · 66cf9344
  sgrannem authored 5 years ago
  
  66cf9344
- Version 4.5 with minor bug fixes · 23660921
  sgrannem authored 5 years ago
  
  23660921
- Fixed a bug in pyBinCollector and GTF2 parser that prevented the -s CDSstart... · 3c3f0e2a
  sgrannem authored 5 years ago
  
  Fixed a bug in pyBinCollector and GTF2 parser that prevented the -s CDSstart and -s CDSend flags from working properly
  3c3f0e2a
- Fixed a bug in pyBinCollector and GTF2 Parser that prevented -s CDSstart and... · 37313830
  sgrannem authored 5 years ago
  
  Fixed a bug in pyBinCollector and GTF2 Parser that prevented -s CDSstart and CDSend from working properly
  37313830
Apr 11, 2019
- Version 1.4.5. Removed an annoying space in pyFastqDuplicateRemover.py that... · 527f1c4b
  sgrannem authored 5 years ago
  
  Version 1.4.5. Removed an annoying space in pyFastqDuplicateRemover.py that prevented it from starting
  527f1c4b
Apr 10, 2019
- Bugfixes. Fixed a bug in the installer that caused a sandbox error · 51674995
  sgrannem authored 5 years ago
  
  51674995
Mar 08, 2019
- Version 1.4.1. Fixed a bug that caused problems with decoding bytes to unicode · 63b1704c
  sgrannem authored 6 years ago
  
  63b1704c
- Merge branch 'master' of https://git.ecdf.ed.ac.uk/sgrannem/pycrac · 8dae4de3
  sgrannem authored 6 years ago
  
  many differences found between branches. Need to merge
  8dae4de3
- fixed a bug in numpy_overlap that caused problems with byte to unicode conversions · 3bfb8f22
  sgrannem authored 6 years ago
  
  3bfb8f22
Feb 19, 2019
- Update README.md · 18a3051d
  sgrannem authored 6 years ago
  
  18a3051d
- Version 1.4.0 beta. Compatible with Python 2 and 3 · 2b76585d
  Sander Granneman authored 6 years ago
  
  v1.4.0
  
  2b76585d