pyPileup accepts fasta file as input as well as tab?
Currently pyPileup.py requires a --tab
input, containing the genome sequence in format as produced by pyFasta2tab.py
. If this contains the same information as .fasta format, would it be possible to optionally specify --fasta
instead, for a fasta-format genome sequence? This would save a step for people using alternative genomes in pyCRAC.