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Created with Raphaël 2.2.022Jan11Sep17Apr17Mar16Jul17Aug1516Jul1317May6Dec22Jun8Mar15Oct16Jul1511Apr108Mar19FebMinor bug fix in the GTF2 parser that prevented the printing the gtf dictionary to a GTF output filemastermasterUpdate file pyCalculateFDRs.pyFixed a bug that prevented pybed2GTF from working properlyUpdate pyCRAC/Parsers/GTF2.pyUpdate README.mdHeader in pyGTF2Fasta.py now reports 1-based inclusive chromosome coordinates in the headerFixed a bug that prevented pyGTF2Fasta from running properlyminor fixesMajor changes to the GTF2 and NGSFileWriter/Reader code to make it easier to understand how gene coordinates are being used. See VERSION.txt for more details1.5.21.5.2Fixed a bug in the FDR.py class that prevented it from using data from a negative control datasetUpdate FDR.pyUpdate FDR.pyUpdate LICENSE.txtUpdate LICENCE.txtFixed a bug in the setup.py that prevented the package from being installed under Python 3.8Update README.mdUpdate README.mdUpdate README.mdVersion 1.5.0. Minor synthax and bug fixes.v.1.5.0 v1.5.0v.1.5.0 v1.5.0Version 1.4.8fixed a small bug in pyGTF2bed.py which truncated the intervals by 1nt. Added a useful function to pyCRAC.MethodsImproved pyCalculateFDRs. Now reports peak heights and FDR for peakMade minor improvements to several scriptsFixed a bug in Coverage and pyBinCollector that caused problems with short UTRsminor fixVersion 4.5 with minor bug fixesFixed a bug in pyBinCollector and GTF2 parser that prevented the -s CDSstart and -s CDSend flags from working properlyFixed a bug in pyBinCollector and GTF2 Parser that prevented -s CDSstart and CDSend from working properlyVersion 1.4.5. Removed an annoying space in pyFastqDuplicateRemover.py that prevented it from startingBugfixes. Fixed a bug in the installer that caused a sandbox errorVersion 1.4.1. Fixed a bug that caused problems with decoding bytes to unicodeMerge branch 'master' of https://git.ecdf.ed.ac.uk/sgrannem/pycracfixed a bug in numpy_overlap that caused problems with byte to unicode conversionsUpdate README.mdVersion 1.4.0 beta. Compatible with Python 2 and 3v1.4.0v1.4.0