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anti_sense-reads_RDN37-1_genomic_test.fasta
barcodes.txt
genes.list
indexes.txt
pyBinCollector_log.txt
pyCalculateFDRs_log.txt
pyCalculateMutationFrequencies_log.txt
pyClusterReads_log.txt
pyGTF2bedGraph_log.txt
pyGTF2sgr_log.txt
pyMotif_log.txt
pyPileup_discarded.txt
pyPileup_log.txt
pyReadAligner_discarded.txt
pyReadAligner_log.txt
pyReadCounters_discarded.txt
pyReadCounters_log.txt
sense-cDNAs_RDN37-1_genomic_test.pileup
sense-cDNAs_SNR17A_genomic_test.pileup
sense-reads_RDN37-1_genomic_test.fasta
sense-reads_RDN37-1_genomic_test.pileup
sense-reads_SNR17A_genomic_test.fasta
sense-reads_SNR17A_genomic_test.pileup
sense-reads_SNR17A_genomic_test.tab
sense-reads_SNR17A_genomic_test_f2a.tab
sense_intervals_test_count_output_clusters.txt
test.bed
test.gtf
test.novo
test.sh
test_1.fasta
test_2.fasta
test_bed2gtf.gtf
test_compressed_splitted_1.fastq
test_compressed_splitted_1.fastq.gz
test_compressed_splitted_2.fastq
test_compressed_splitted_2.fastq.gz
test_coordinates.txt
test_corrected.gtf
test_count_output_FDRs_005.gtf
test_count_output_FDRs_005_features_FDR_data.txt
test_count_output_FDRs_005_with_muts.gtf
test_count_output_FDRs_addboth_20.gtf
test_count_output_FDRs_addleft_20.gtf
test_count_output_FDRs_addright_20.gtf
test_count_output_FDRs_fixed_20.gtf
test_count_output_FDRs_min_20.gtf
test_count_output_all_50.pileup
test_count_output_clusters.gtf
test_count_output_clusters_all_data_k-mers_count.txt
test_count_output_clusters_all_k-mer_Z_scores.txt
test_count_output_clusters_all_random_k-mers_count.txt
test_count_output_clusters_all_top_k-mers_in_features.gtf
test_count_output_clusters_hittable_clusters.txt
test_count_output_clusters_protein_coding_data_k-mers_count.txt
test_count_output_clusters_protein_coding_k-mer_Z_scores.txt
test_count_output_clusters_protein_coding_random_k-mers_count.txt
test_count_output_clusters_protein_coding_top_k-mers_in_features.gtf
test_count_output_protein_coding_50.pileup
test_count_output_reads.gtf
test_count_output_reads.gtf.indx
test_count_output_selected_1_5.gtf
test_exon_hittable_reads.txt
test_f.fasta
test_f.fastq
test_f.fastq.gz
test_f.fastq_ATCACGAT_exp1.fastq
test_f.fastq_CGATGTAT_exp2.fastq
test_f.fastq_TGACCAAT_exp4.fastq
test_f.fastq_TTAGGCAT_exp3.fastq
test_f.fastq_barcode_statistics.txt
test_f.fastq_others.fastq
test_f_ATCACGAT_exp1.fastq
test_f_CGATGTAT_exp2.fastq
test_f_TGACCAAT_exp4.fastq
test_f_TTAGGCAT_exp3.fastq
test_f_barcode_statistics.txt
test_f_dm.fastq
test_f_dm_NNNNNNATCACG_IDX1.fastq
test_f_dm_NNNNNNATCACG_IDX1.fastq.gz
test_f_dm_NNNNNNCGATGT_IDX2.fastq
test_f_dm_NNNNNNCGATGT_IDX2.fastq.gz
test_f_dm_NNNNNNTGACCA_IDX4.fastq
test_f_dm_NNNNNNTGACCA_IDX4.fastq.gz
test_f_dm_NNNNNNTTAGGC_IDX3.fastq
test_f_dm_NNNNNNTTAGGC_IDX3.fastq.gz
test_f_dm_barcode_statistics.txt
test_f_dm_others.fastq
test_f_dm_others.fastq.gz
test_f_dm_random_nucleotide_statistics.txt
test_f_others.fastq
test_file_statistics_reads.txt
test_gtf_gene_names.txt
test_gtf_sources.txt
test_hittable_reads.txt
test_incompatible.gtf
test_intron_hittable_reads.txt
test_joined.fastq
test_joined_compressed.fastq.gz
test_out_minus_strand_reads.bedgraph