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Swain Lab
aliby
aliby-mirror
Commits
b12c2993
Commit
b12c2993
authored
3 years ago
by
Alán Muñoz
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add multisignal prefixing
Former-commit-id: f281c871f4219d00f03a7476755e642f108b69bb
parent
ca7159a1
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1
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core/processor.py
+25
-8
25 additions, 8 deletions
core/processor.py
with
25 additions
and
8 deletions
core/processor.py
+
25
−
8
View file @
b12c2993
...
@@ -67,9 +67,8 @@ class PostProcessor:
...
@@ -67,9 +67,8 @@ class PostProcessor:
@staticmethod
@staticmethod
def
get_process
(
process
):
def
get_process
(
process
):
"""
"""
Get process from folder ./processes
Dynamically import a process class from the
'
processes
'
folder.
"""
"""
print
(
__file__
)
return
locate
(
"
postprocessor.core.processes.
"
+
process
+
"
.
"
+
process
)
return
locate
(
"
postprocessor.core.processes.
"
+
process
+
"
.
"
+
process
)
def
run
(
self
):
def
run
(
self
):
...
@@ -77,12 +76,30 @@ class PostProcessor:
...
@@ -77,12 +76,30 @@ class PostProcessor:
for
name
,
ids
in
new_ids
.
items
():
for
name
,
ids
in
new_ids
.
items
():
self
.
_writer
.
write
(
ids
,
"
/postprocessing/cell_info/
"
+
name
)
self
.
_writer
.
write
(
ids
,
"
/postprocessing/cell_info/
"
+
name
)
picks
=
self
.
picker
.
run
(
self
.
_signal
[
self
.
processes
[
"
picker
"
][
0
]])
picks
=
self
.
picker
.
run
(
self
.
_signal
[
self
.
processes
[
"
picker
"
][
0
]])
return
picks
for
process
,
datasets
in
self
.
processes
.
values
():
# for process, dataset, outpath in zip(
for
dataset
in
datasets
:
# self.processes, self.datasets["processes"], self.outpaths
if
isinstance
(
dataset
,
list
):
# multisignal process
# ):
result
=
self
.
processes
[
"
process
"
].
run
(
# processed_result = process.run(self._signals.get_dataset(dataset))
[
self
.
_signal
[
d
]
for
d
in
dataset
]
# self.writer.write(processed_result, dataset, outpath)
)
prefix
=
""
.
join
(
prefix
+
c
[
0
]
for
c
in
takewhile
(
lambda
x
:
all
(
x
[
0
]
==
y
for
y
in
x
),
zip
(
*
dataset
)
)
)
outpath
=
(
prefix
+
"
_
"
.
join
(
# TODO check that it always finishes in '/'
[
d
[
len
(
prefix
)
:].
replace
(
"
/
"
,
"
_
"
)
for
d
in
dataset
]
)
)
elif
isinstance
(
dataset
,
str
):
result
=
self
.
processes
[
"
process
"
].
run
(
self
.
_signal
[
dataset
])
outpath
=
dataset
[
1
:].
replace
(
"
/
"
,
"
_
"
)
else
:
raise
(
"
Not appropiate dataset
"
)
self
.
writer
.
write
(
result
,
"
/postprocessing/
"
+
process
+
"
/
"
+
outpath
)
def
_if_dict
(
item
):
def
_if_dict
(
item
):
...
...
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