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Commit dc5fe6b2 authored by Alán Muñoz's avatar Alán Muñoz
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fix(pp): refactored picker returns proper shape

parent 7a9380ac
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...@@ -166,7 +166,6 @@ class PostProcessor(ProcessABC): ...@@ -166,7 +166,6 @@ class PostProcessor(ProcessABC):
lineage = _assoc_indices_to_3d(self.picker.cells.mothers_daughters) lineage = _assoc_indices_to_3d(self.picker.cells.mothers_daughters)
lineage_merged = [] lineage_merged = []
indices = get_index_as_np(record)
if merges.any(): # Update lineages after merge events if merges.any(): # Update lineages after merge events
grouped_merges = group_merges(merges) grouped_merges = group_merges(merges)
...@@ -234,9 +233,6 @@ class PostProcessor(ProcessABC): ...@@ -234,9 +233,6 @@ class PostProcessor(ProcessABC):
else: else:
parameters = self.parameters_classfun[process].default() parameters = self.parameters_classfun[process].default()
if process == "buddings":
print("stop")
loaded_process = self.classfun[process](parameters) loaded_process = self.classfun[process](parameters)
if isinstance(parameters, LineageProcessParameters): if isinstance(parameters, LineageProcessParameters):
loaded_process.lineage = self.lineage loaded_process.lineage = self.lineage
......
...@@ -100,7 +100,7 @@ class Picker(LineageProcess): ...@@ -100,7 +100,7 @@ class Picker(LineageProcess):
self._log(f"No lineage assignment") self._log(f"No lineage assignment")
indices = np.array([]) indices = np.array([])
return np.array([tuple(map(_str_to_int, x)) for x in indices]) return np.array([tuple(map(_str_to_int, x)) for x in indices]).T
def switch_case( def switch_case(
self, self,
......
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