change(pyproject.toml): reorganise dependencies

pyproject.toml

@@ -15,6 +15,7 @@ readme = "README.md"
 [tool.poetry.scripts]
 aliby-run = "aliby.bin.run:run"
 aliby-annotate = "aliby.bin.annotate:annotate_image"
+aliby-visualise = "aliby.bin.visualise:napari_overlay"
 
 [build-system]
 requires = ["setuptools", "poetry-core>=1.0.0"]
@@ -26,6 +27,7 @@ PyYAML = "^6.0"
 flatten-dict = "^0.4.2"
 gaussianprocessderivatives = "^0.1.5"
 numpy = ">=1.21.6"
+Bottleneck = "^1.3.5"
 opencv-python = "^4.7.0.72"
 pathos = "^0.2.8" # Lambda-friendly multithreading
 p-tqdm = "^1.3.3"
@@ -41,14 +43,12 @@ requests-toolbelt = "^0.9.1"
 scikit-image = ">=0.18.1"
 tqdm = "^4.62.3" # progress bars
 xmltodict = "^0.13.0" # read ome-tiff metadata
+zarr = "^2.14.0"
 
 
 # Networking
 omero-py = { version = ">=5.6.2", optional = true } # contact omero server
-zeroc-ice = { version="3.6.5", optional = true } # networking interface, slow to build
 GitPython = "^3.1.27"
-Bottleneck = "^1.3.5"
-zarr = "^2.14.0"
 
 [tool.poetry.extras]
 omero = [ "omero-py" ]
@@ -83,14 +83,8 @@ jupytext = "^1.14.4"
 grid-strategy = "^0.0.1"
 readchar = "^4.0.3"
 ipdb = "^0.13.11"
-trio = "^0.22.0"
 
 
-[tool.poetry.group.napari]
-optional = true
-
-[tool.poetry.group.napari.dependencies]
-napari = ">=0.4.16"
 
 [tool.poetry.group.docs]
 optional = true
@@ -107,13 +101,15 @@ optional = true
 [tool.poetry.group.test.dependencies]
 pytest = "^6.2.5"
 
-[tool.poetry.group.torch]
+[tool.poetry.group.utils]
 optional = true
 
-[tool.poetry.group.torch.dependencies]
+[tool.poetry.group.utils.dependencies]
+napari = ">=0.4.16"
 torch = "^1.13.1"
 pytorch-lightning = "^1.9.3"
 torchvision = "^0.14.1"
+trio = "^0.22.0"
 
 [tool.black]
 line-length = 79