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Swain Lab
aliby
alibylite
Commits
01d698a9
Commit
01d698a9
authored
2 years ago
by
Alán Muñoz
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feat(image): add from_h5 builder
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89dcb065
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aliby/io/image.py
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01d698a9
...
@@ -6,6 +6,7 @@ from pathlib import Path, PosixPath
...
@@ -6,6 +6,7 @@ from pathlib import Path, PosixPath
import
dask.array
as
da
import
dask.array
as
da
import
xmltodict
import
xmltodict
from
agora.io.writer
import
load_attributes
from
dask.array.image
import
imread
from
dask.array.image
import
imread
from
tifffile
import
TiffFile
from
tifffile
import
TiffFile
...
@@ -209,6 +210,30 @@ class Image(Argo):
...
@@ -209,6 +210,30 @@ class Image(Argo):
# images from OMERO
# images from OMERO
self
.
_image_wrap
=
None
self
.
_image_wrap
=
None
@classmethod
def
from_h5
(
cls
,
filepath
:
t
.
Union
[
str
,
PosixPath
],
):
"""
Instatiate Image from a hdf5 file.
Parameters
----------
cls : Image
Image class
filepath : t.Union[str, PosixPath]
Location of hdf5 file.
Examples
--------
FIXME: Add docs.
"""
metadata
=
load_attributes
(
filepath
)
image_id
=
metadata
[
"
image_id
"
]
server_info
=
metadata
[
"
parameters
"
][
"
general
"
].
get
(
"
server_info
"
,
{})
return
cls
(
image_id
,
**
server_info
)
@property
@property
def
image_wrap
(
self
):
def
image_wrap
(
self
):
"""
"""
...
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