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Swain Lab
aliby
alibylite
Commits
2de065f5
Commit
2de065f5
authored
2 years ago
by
Alán Muñoz
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refactor(signal): extend index_names
parent
a6f5a318
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3 changed files
src/agora/io/signal.py
+11
-7
11 additions, 7 deletions
src/agora/io/signal.py
src/postprocessor/core/reshapers/merger.py
+0
-0
0 additions, 0 deletions
src/postprocessor/core/reshapers/merger.py
src/postprocessor/core/reshapers/picker.py
+0
-0
0 additions, 0 deletions
src/postprocessor/core/reshapers/picker.py
with
11 additions
and
7 deletions
src/agora/io/signal.py
+
11
−
7
View file @
2de065f5
...
...
@@ -23,7 +23,13 @@ class Signal(BridgeH5):
def
__init__
(
self
,
file
:
t
.
Union
[
str
,
PosixPath
]):
super
().
__init__
(
file
,
flag
=
None
)
self
.
names
=
[
"
experiment
"
,
"
position
"
,
"
trap
"
]
self
.
index_names
=
(
"
experiment
"
,
"
position
"
,
"
trap
"
,
"
cell_label
"
,
"
mother_label
"
,
)
def
__getitem__
(
self
,
dsets
:
t
.
Union
[
str
,
t
.
Collection
]):
...
...
@@ -223,7 +229,6 @@ class Signal(BridgeH5):
def
apply_merge
(
self
,
df
,
changes
):
if
len
(
changes
):
for
target
,
source
in
changes
:
df
.
loc
[
tuple
(
target
)]
=
self
.
join_tracks_pair
(
df
.
loc
[
tuple
(
target
)],
df
.
loc
[
tuple
(
source
)]
...
...
@@ -266,12 +271,11 @@ class Signal(BridgeH5):
def
dset_to_df
(
self
,
f
,
dataset
):
dset
=
f
[
dataset
]
names
=
copy
(
self
.
names
)
if
not
dataset
.
endswith
(
"
imBackground
"
):
names
.
append
(
"
cell_label
"
)
lbls
=
{
lbl
:
dset
[
lbl
][()]
for
lbl
in
names
if
lbl
in
dset
.
keys
()}
index_names
=
copy
(
self
.
index_names
)
valid_names
=
[
lbl
for
lbl
in
index_names
if
lbl
in
dset
.
keys
()]
index
=
pd
.
MultiIndex
.
from_arrays
(
list
(
lbls
.
values
()),
names
=
names
[
-
len
(
lbls
)
:]
[
dset
[
lbl
]
for
lbl
in
valid_names
],
names
=
valid_names
)
columns
=
(
...
...
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src/postprocessor/core/
processe
s/merger.py
→
src/postprocessor/core/
reshaper
s/merger.py
+
0
−
0
View file @
2de065f5
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src/postprocessor/core/
processe
s/picker.py
→
src/postprocessor/core/
reshaper
s/picker.py
+
0
−
0
View file @
2de065f5
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