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Swain Lab
aliby
alibylite
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88abdcbb
Commit
88abdcbb
authored
2 years ago
by
pswain
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docs(extractor): add docstring to extract_tp
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extraction/core/extractor.py
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@@ -324,12 +324,33 @@ class Extractor(ProcessABC):
labels
=
None
,
**
kwargs
,
)
->
dict
:
"""
Extract individual time-point from images and masks
"""
Core extraction method for an individual time-point.
Parameters
----------
tp : int
Time-point being analysed.
tree : dict
Nested dictionary indicating channels, reduction functions and
metrics to use during extraction.
tile_size : int
size of the tile to be extracted.
masks : np.ndarray
3-D boolean numpy array with dimensions (ncells, tile_size,
tile_size.
labels : t.List[t.List[int]]
List of list of ints indicating the ids of masks.
**kwargs : Additional keyword arguments to be passed to extractor.reduce_extract.
Returns
-------
dict
Examples
--------
FIXME: Add docs.
:param tp: int timepoint from which to extract results
:param tree: dict of dict {channel : {reduction_function : metrics}}
:**kwargs: Must include masks and preferably labels.
"""
if
tree
is
None
:
...
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