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Commit b95e79fc authored by pswain's avatar pswain
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changed max5px to max5px_median

parent 87a20fd8
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...@@ -90,9 +90,10 @@ def max2p5pc(cell_mask, trap_image) -> float: ...@@ -90,9 +90,10 @@ def max2p5pc(cell_mask, trap_image) -> float:
return np.mean(top_values) return np.mean(top_values)
def max5px(cell_mask, trap_image) -> float: def max5px_median(cell_mask, trap_image) -> float:
""" """
Find the mean of the five brightest pixels in the cell. Find the mean of the five brightest pixels in the cell divided by the
median of all pixels.
Parameters Parameters
---------- ----------
...@@ -105,7 +106,7 @@ def max5px(cell_mask, trap_image) -> float: ...@@ -105,7 +106,7 @@ def max5px(cell_mask, trap_image) -> float:
top_values = bn.partition(pixels, len(pixels) - 5)[-5:] top_values = bn.partition(pixels, len(pixels) - 5)[-5:]
# find mean of five brightest pixels # find mean of five brightest pixels
max5px = np.mean(top_values) max5px = np.mean(top_values)
return max5px return max5px / np.median(pixels)
def std(cell_mask, trap_image): def std(cell_mask, trap_image):
......
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