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Commit ee15319e authored by pswain's avatar pswain
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change(examples): added run_zarr

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from aliby.pipeline import Pipeline, PipelineParameters
omero_dir = "/Swainlab/omero_backup/"
omid = "19477_2020_11_27_steadystate_glucose_898_exposure_901_2w0p01_00"
h5dir = "~/aliby_output/"
# setup and run pipeline
params = PipelineParameters.default(
general={
"expt_id": omero_dir + omid,
"distributed": 4,
"directory": h5dir,
},
# some old movies have three not five z stacks
# you may need to uncomment
# baby={"n_stacks": "3z"},
)
# initialise and run pipeline
p = Pipeline(params)
p.run()
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