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Swain Lab
aliby
alibylite
Commits
f1b05547
Commit
f1b05547
authored
2 years ago
by
Alán Muñoz
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refactor(signal): use cached propertie3s
parent
403b483d
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1 changed file
src/agora/io/signal.py
+24
-20
24 additions, 20 deletions
src/agora/io/signal.py
with
24 additions
and
20 deletions
src/agora/io/signal.py
+
24
−
20
View file @
f1b05547
...
...
@@ -193,38 +193,39 @@ class Signal(BridgeH5):
merged
=
pd
.
DataFrame
([],
index
=
index
)
return
merged
@
cached_
property
@property
def
datasets
(
self
):
if
not
hasattr
(
self
,
"
_
siglist
"
):
self
.
_
siglist
=
[]
if
not
hasattr
(
self
,
"
_
available
"
):
self
.
_
available
=
[]
with
h5py
.
File
(
self
.
filename
,
"
r
"
)
as
f
:
f
.
visititems
(
self
.
get_siglist
)
f
.
visititems
(
self
.
store_signal_url
)
for
sig
in
self
.
siglist
:
print
(
sig
)
@cached_property
def
p_
siglist
(
self
):
def
p_
available
(
self
):
"""
Print signal list
"""
self
.
datasets
@cached_property
def
siglist
(
self
):
"""
Return list of signals
"""
def
available
(
self
):
"""
Return list of
available
signals
"""
try
:
if
not
hasattr
(
self
,
"
_siglist
"
):
self
.
_siglist
=
[]
with
h5py
.
File
(
self
.
filename
,
"
r
"
)
as
f
:
f
.
visititems
(
self
.
get_siglist
)
if
not
hasattr
(
self
,
"
_available
"
):
self
.
_available
=
[]
with
h5py
.
File
(
self
.
filename
,
"
r
"
)
as
f
:
f
.
visititems
(
self
.
store_signal_url
)
except
Exception
as
e
:
print
(
"
Error visiting h5: {}
"
.
format
(
e
))
self
.
_siglist
=
[]
return
self
.
_
siglist
return
self
.
_
available
def
get_merged
(
self
,
dataset
):
return
self
.
apply_prepost
(
dataset
,
skip_
picks
=
Tru
e
)
return
self
.
apply_prepost
(
dataset
,
picks
=
Fals
e
)
@cached_property
def
merges
(
self
):
...
...
@@ -327,18 +328,21 @@ class Signal(BridgeH5):
# columns=f[path + "/timepoint"][()],
# )
def
get_siglist
(
self
,
node
):
fullname
=
node
.
name
def
store_signal_url
(
self
,
fullname
:
str
,
node
:
t
.
Union
[
h5py
.
Dataset
,
h5py
.
Group
]
):
"""
Store the name of a signal it is a leaf node (a group with no more groups inside)
and starts with extraction
"""
if
isinstance
(
node
,
h5py
.
Group
)
and
np
.
all
(
[
isinstance
(
x
,
h5py
.
Dataset
)
for
x
in
node
.
values
()]
):
self
.
_if_ext_or_post
(
fullname
,
self
.
_
siglist
)
self
.
_if_ext_or_post
(
fullname
,
self
.
_
available
)
@staticmethod
def
_if_ext_or_post
(
name
:
str
,
siglist
:
list
):
if
name
.
startswith
(
"
/extraction
"
)
or
name
.
startswith
(
"
/postprocessing
"
):
if
name
.
startswith
(
"
extraction
"
)
or
name
.
startswith
(
"
postprocessing
"
):
siglist
.
append
(
name
)
@staticmethod
...
...
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