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Commit fb8225d2 authored by Arin Wongprommoon's avatar Arin Wongprommoon
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docs(aliby): image annotation commands and destination file

WHY IS THIS CHANGE NEEDED?:
- user needs to know these if they use the annotation script

HOW DOES THE CHANGE SOLVE THE PROBLEM?:
- edit docstring in top of file
parent 8a1b4758
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......@@ -5,10 +5,18 @@ Currently only works on UNIX-like systems due to using "/" to split addresses.
Usage example
From python
$ python dev_async_annotator.py --image_path path/to/folder/with/h5files --results_path path/to/folder/with/images/zarr --pos position_name --ncells max_n_to_annotate
$ python annotator.py --image_path path/to/folder/with/h5files --results_path path/to/folder/with/images/zarr --pos position_name --ncells max_n_to_annotate
As executable (installed via poetry)
$ dev_async_annotator.py --image_path path/to/folder/with/h5files --results_path path/to/folder/with/images/zarr --pos position_name --ncells max_n_to_annotate
$ annotator.py --image_path path/to/folder/with/h5files --results_path path/to/folder/with/images/zarr --pos position_name --ncells max_n_to_annotate
During annotation:
- Assign a (binary) label by typing '1' or '2'.
- Type 'u' to undo.
- Type 's' to skip.
- Type 'q' to quit.
File will be saved in: ./YYYY-MM-DD_annotation/annotation.csv, where YYYY-MM-DD is the current date.
"""
import argparse
......
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