Commits · 176aa03f28da04cc130a2adeea98525d55323612 · Swain Lab / aliby / alibylite · GitLab

Snippets Groups Projects

Jan 09, 2023
- remove(ext): delete faiss and k2_major_median · 176aa03f
  Alán Muñoz authored 2 years ago
  
  176aa03f
- chore(pyproject): Remove faiss-gpu from deps · 802996f6
  Alán Muñoz authored 2 years ago
  
  802996f6
Jan 08, 2023
- ci(aliby): run pytest inside poetry · cdb9abc4
  Alán Muñoz authored 2 years ago
  
  cdb9abc4
- ci(aliby): fix extraction of downloaded expt · 34fad656
  Alán Muñoz authored 2 years ago
  
  34fad656
- ci(aliby): activate full install for net tests · 50008edb
  Alán Muñoz authored 2 years ago
  
  50008edb
- change(aliby): Ignore pipeline in local tests · a443cafb
  Alán Muñoz authored 2 years ago
  
  a443cafb
- change(aliby): remove local integration stage · 262ad7da
  Alán Muñoz authored 2 years ago
  
  262ad7da
- change(aliby): move tests to network stage · 76745b11
  Alán Muñoz authored 2 years ago
  
  76745b11
- change(aliby): add coverage to pyproject and lock · 8cbb62e8
  Alán Muñoz authored 2 years ago
  
  8cbb62e8
- fix(CI): update filename and single experiment dir · 732e33bb
  Alán Muñoz authored 2 years ago
  
  732e33bb
- test(pipeline): outcommen test content · dfccfc28
  Alán Muñoz authored 2 years ago
  
  dfccfc28
- tests(pipeline): add local tests · bca3f582
  Alán Muñoz authored 2 years ago
  
  bca3f582
- feat(CI): add minimal pipeline test to ci · e4d1a55f
  Alán Muñoz authored 2 years ago
  
  e4d1a55f
Jan 07, 2023
- fix(ImageDir): sort dimensions. Pipeline runs · 4e6fc16b
  Alán Muñoz authored 2 years ago
  
  4e6fc16b
- fix(pipeline): convert path to str before storing · 120c267b
  Alán Muñoz authored 2 years ago
  
  120c267b
- feat(DynamicWriter): Only load meta if file exists · b0b6d869
  Alán Muñoz authored 2 years ago
  
  b0b6d869
- fix(dataset): pass kwargs as-is for ome dataset · 8eeb2bf8
  Alán Muñoz authored 2 years ago
  
  8eeb2bf8
- refactor(image): self.meta -> self._meta · eddbddcb
  Alán Muñoz authored 2 years ago
  
  eddbddcb
- [WIP]feat(extraction): support metaless channels · c0debe3e
  Alán Muñoz authored 2 years ago
  
  c0debe3e
- [WIP]feat(tiler): support metaless local expts · 95675a7e
  Alán Muñoz authored 2 years ago
  
  95675a7e
- [WIP]refactor(pipeline): rm meta managemnet · 16faba8f
  Alán Muñoz authored 2 years ago
  
  16faba8f
- refactor(meta): metadata prop in ImageLocalBase · f531d195
  Alán Muñoz authored 2 years ago
  
  f531d195
- refactor(pipeline): overwrite before filecheck · 76048ae0
  Alán Muñoz authored 2 years ago
  
  76048ae0
Jan 06, 2023
- fix(Pipeline): incorporate new Dataset/ImageDir · fc286f99
  Alán Muñoz authored 2 years ago
  
  fc286f99
- refactor(dataset): create dispatch function · 13ed9a59
  Alán Muñoz authored 2 years ago
  
  13ed9a59
- fix(meta): cover empty case for flatten_dict · 9f00221f
  Alán Muñoz authored 2 years ago
  
  9f00221f
- chore(pyproject): bump version · 11c70db9
  Alán Muñoz authored 2 years ago
  
  v0.1.51
  
  11c70db9
- Merge branch '042-feat-minimal-metadata' into dev · c1b50963
  Alán Muñoz authored 2 years ago
  
  c1b50963
- [WIP] feat(dataset): add DatasetDir · 27fd9ffd
  Alán Muñoz authored 2 years ago
  
  27fd9ffd
- [WIP]feat(dataset): Support dataset without meta · 929d626f
  Alán Muñoz authored 2 years ago
  
  929d626f
Jan 05, 2023
- tests(Image): rename ImageLocal->ImageLocalOME · 6d00118d
  Alán Muñoz authored 2 years ago
  
  6d00118d
- feat(image): add name, dimorder to ImageDir · bd61641b
  Alán Muñoz authored 2 years ago
  
  bd61641b
- docs(meta): Improve warning no logfile message · 46725a28
  Alán Muñoz authored 2 years ago
  
  46725a28
- fix(meta): update given df.to_dict returning list · 2c1f79e6
  Alán Muñoz authored 2 years ago
  
  2c1f79e6
- refactor(Image): Rename ImageLocal->ImageLocalOME · 7206793a
  Alán Muñoz authored 2 years ago
  
  7206793a
- refactor(Image): Use ABC for BaseLocalImage · 522a0bf9
  Alán Muñoz authored 2 years ago
  
  522a0bf9
Jan 04, 2023
- chore(version): bump to v0.1.50 · 522635ce
  Alán Muñoz authored 2 years ago
  
  v0.1.50
  
  522635ce
- test(meta): add legacy meta parser · b0dd0888
  Alán Muñoz authored 2 years ago
  
  b0dd0888
- feat(meta): add legacy parser · 2088e952
  Alán Muñoz authored 2 years ago
  
  2088e952
- feat(meta): add swainlab parser · 5bd87154
  Alán Muñoz authored 2 years ago
  
  5bd87154