Commits · 2774a39d45489f6d0bfe60c11368c3ce61dd5b16 · Swain Lab / aliby / alibylite · GitLab

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Jan 18, 2024

change(__init__.py): added __version__ · 2774a39d

pswain authored 1 year ago

Version is stored in aliby/version.py, as well as independently in pyproject.toml.

2774a39d

Jan 17, 2024
- Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite · 8afe8285
  pswain authored 1 year ago
  
  8afe8285
Jan 16, 2024
- fix(concat_one_signal): ensured kwargs passed to signal.get_raw · 5704efd7
  pswain authored 1 year ago
  
  5704efd7
Dec 23, 2023
- change(signal): remove __getitem__; get is clearer · cba3bf4f
  pswain authored 1 year ago
  
  cba3bf4f
- tweak(bud_metric): to docs · 8a537cd9
  pswain authored 1 year ago
  
  8a537cd9
Dec 22, 2023
- fix(grouper): more for tmax_in_mins_dict; comments on concat_one_signal · 7d7eaf10
  pswain authored 1 year ago
  
  7d7eaf10
Dec 21, 2023
- feature(grouper, signal): added tmax_in_mins_dict and tmax_in_mins · 37cc32fc
  pswain authored 1 year ago
  
  37cc32fc
- change(indexing): validate_lineage always warns if lineage misassigned · 20d85934
  pswain authored 1 year ago
  
  20d85934
- feature(Grouper): added specifying positions in concat_signal · b97331da
  pswain authored 1 year ago
  
  b97331da
- feature(signal): make check on lineage assignment by validate_lineage optional · eb00e2b2
  pswain authored 1 year ago
  
  eb00e2b2
Dec 19, 2023
- fix(indexing): fixed test_mismatch for daughters in validate_lineage · fbc1d8f2
  pswain authored 1 year ago
  
  fbc1d8f2
Dec 15, 2023
- fix(grouper): perform check if dataframe is None · ed795642
  pswain authored 1 year ago
  
  ed795642
Dec 12, 2023
- bug(metadata): removed confusing Warning about missing .log files · 09cb1a59
  pswain authored 1 year ago
  
  09cb1a59
- Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite · 2c41958b
  pswain authored 1 year ago
  
  2c41958b
- update(pipeline): write version of Baby to log · 5691f7e7
  pswain authored 1 year ago
  
  5691f7e7
Dec 09, 2023
- tidy(imageviewer): addedl localimageviewer; moved functions to base class · 92c72264
  pswain authored 1 year ago
  
  92c72264
- bug(tiler): tile_locs should tile_locations in from_h5 · 35ce0107
  pswain authored 1 year ago
  
  35ce0107
Dec 07, 2023
- tidy(pipeline): removed haystack; added initialise_tf to pipeline · 5c2923a9
  pswain authored 1 year ago
  
  5c2923a9
Dec 06, 2023
- change(retained): default cutoff is 0 · 5ca40821
  pswain authored 1 year ago
  
  5ca40821
- feat(grouper): add "mothers" mode to concat_signal · b79b6cb5
  pswain authored 1 year ago
  
  b79b6cb5
- change(bud_metric): Signal only for buds; mother_label dropped · a71c3719
  pswain authored 1 year ago
  
  a71c3719
- reverted(signal): no picking & merging in get_raw; use get instead · 92eb1f29
  pswain authored 1 year ago
  
  92eb1f29
- feat(pipeline): outputs version of BABY being used · 9a78349b
  pswain authored 1 year ago
  
  9a78349b
Nov 28, 2023
- bug(apply_merges): merges implementing on more than valid_merges · bac3de6a
  pswain authored 1 year ago
  
  bac3de6a
- bug(grouper): tinterval failing with arrays · 19e676d9
  pswain authored 1 year ago
  
  19e676d9
Nov 24, 2023
- bug(signal): timeinterval can now be a list or an int · f2f8d3e3
  pswain authored 1 year ago
  
  f2f8d3e3
Nov 23, 2023
- Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite · c282a97c
  pswain authored 1 year ago
  
  c282a97c
- feat(metadata): added timeinterval to minimal_meta_swainlab · 0bce02e6
  pswain authored 1 year ago
  
  0bce02e6
- bug(bud_metric): indentation error causing crash when no bud_signal · f1f190d1
  Peter Swain authored 1 year ago
  
  f1f190d1
- bug(tiler): find_channels_per_position worked for one type of metadata only · 27da0ad4
  Peter Swain authored 1 year ago
  
  27da0ad4
Nov 14, 2023
- feat(Signal): returns None rather than error if data is missing · 5c9e7adc
  pswain authored 1 year ago
  
  5c9e7adc
Nov 10, 2023
- reverted baby_client; feat(swainlab_parser): tolerate non-ascii characters · 02f7587b
  pswain authored 1 year ago
  
  02f7587b
Nov 03, 2023
- bud_metric returns all cells; Signal's get_raw give merges and picks as options. · f5e78af0
  pswain authored 1 year ago
  
  f5e78af0
- fix(abc.update): to update a param in an existing param dict · a8e05eae
  pswain authored 1 year ago
  
  a8e05eae
Nov 02, 2023
- feat(babysitter): removed pixel_size; docs(bud_metric) · fb7a49e8
  pswain authored 1 year ago
  
  fb7a49e8
Nov 01, 2023
- feat(babysitter): added pixel_size to BabyParameters · 7b770b3f
  pswain authored 1 year ago
  
  7b770b3f
Oct 31, 2023
- fix(baby_sitter): parameters passed to Baby's brain · 942aa01e
  pswain authored 1 year ago
  
  942aa01e
- added baby_sitter to run new version of BABY · abc8df96
  pswain authored 1 year ago
  
  abc8df96
Oct 29, 2023
- extended bgsub to multichannel functions · 4fc31051
  pswain authored 1 year ago
  
  4fc31051
- made background subtraction a separate function in extractor · e5d83cf7
  pswain authored 1 year ago
  
  e5d83cf7