Commits · 3af41530c8f8beef828a8a62176c6241ed1bdccb · Swain Lab / aliby / alibylite · GitLab

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May 30, 2024
- change(extractor): added cells' spatial locations · 3af41530
  pswain authored 9 months ago
  
  3af41530
- change: alibylite.org; dataset to get_position_ids · 5c948403
  pswain authored 9 months ago
  
  5c948403
May 02, 2024
- change: importlib_resources to importlib.resources · e8287973
  pswain authored 10 months ago
  
  e8287973
Feb 19, 2024
- change(processABC): _log to log · d6e76266
  pswain authored 1 year ago
  
  d6e76266
Oct 31, 2023
- added baby_sitter to run new version of BABY · abc8df96
  pswain authored 1 year ago
  
  abc8df96
Oct 29, 2023
- extended bgsub to multichannel functions · 4fc31051
  pswain authored 1 year ago
  
  4fc31051
- made background subtraction a separate function in extractor · e5d83cf7
  pswain authored 1 year ago
  
  e5d83cf7
Oct 27, 2023
- updated pipeline to no longer call defaults · 38521cfe
  pswain authored 1 year ago
  
  38521cfe
- removed defaults because of global_parameters; functions to extractor · 83572b7f
  pswain authored 1 year ago
  
  83572b7f
Oct 20, 2023
- added global_parameters to define all hardcoded parameters · 0a443f0f
  pswain authored 1 year ago
  
  0a443f0f
- cleaned and documented tiler · 8b4bfacd
  pswain authored 1 year ago
  
  8b4bfacd
- changed load_attributes to load_meta · 793ce5d7
  pswain authored 1 year ago
  
  793ce5d7
- changed max5px to max5px_median · b95e79fc
  pswain authored 1 year ago
  
  b95e79fc
Aug 14, 2023
- partway through add multichannel op to extractor · 43b39090
  pswain authored 1 year ago
  
  43b39090
Aug 12, 2023
- renamed variables in extractor · 109b10f2
  pswain authored 1 year ago
  
  109b10f2
Aug 11, 2023
- added moment_of_inertia to cell functions · 85a66bb2
  pswain authored 1 year ago
  
  85a66bb2
Aug 10, 2023
- hack in reduce_extract to pass tests: labels to cell_labels · ff678c65
  pswain authored 1 year ago
  
  ff678c65
- tided pipeline; moved checks to extractor · c83a6ff4
  pswain authored 1 year ago
  
  c83a6ff4
Aug 09, 2023
- cleaned extractor · b46069ce
  pswain authored 1 year ago
  
  b46069ce
Jun 29, 2023
- more docs; replaced indexing with the original again · 5d8bfd03
  pswain authored 1 year ago
  
  5d8bfd03
Jun 09, 2023
- mostly comments; changed image_ids to position_ids in pipeline · 4a547de7
  pswain authored 1 year ago
  
  4a547de7
Mar 17, 2023
- refactor(aliby): PosixPath->Path · b16333f2
  Alán Muñoz authored 2 years ago
  
  b16333f2
- clean(imageviewer): remove unused class · f4157d4b
  Alán Muñoz authored 2 years ago
  
  f4157d4b
Mar 16, 2023
- clean(docs): remove unused prints · 802396af
  Alán Muñoz authored 2 years ago
  
  802396af
Mar 09, 2023
- change(aliby): Consider Peter's Code Review · 69c210cf
  Alán Muñoz authored 2 years ago
  
  69c210cf
Mar 06, 2023
- fix(extractor): enforce ndarray for bg masks · dc4e96df
  Alán Muñoz authored 2 years ago
  
  dc4e96df
Mar 02, 2023
- fix(extractor): works with z-stack before yx · d6ccb5c4
  Alán Muñoz authored 2 years ago
  
  d6ccb5c4
Feb 28, 2023
- fix(extraction): tests account for dimension used · b87fc9a5
  Alán Muñoz authored 2 years ago
  
  b87fc9a5
Feb 27, 2023
- fix(test): adjust custom function tests · 0514010c
  Alán Muñoz authored 2 years ago
  
  0514010c
- docs(distributors): document change in cell dim · 41531690
  Alán Muñoz authored 2 years ago
  
  41531690
- fix(distributors): simplify using cell axis 0 · a23f2e45
  Alán Muñoz authored 2 years ago
  
  a23f2e45
- change(cells): stack cellmasks in dim 0 · 55b2787d
  Alán Muñoz authored 2 years ago
  
  55b2787d
Feb 21, 2023
- docs(extraction): Include dimension information · 6ea38123
  Alán Muñoz authored 2 years ago
  
  6ea38123
Feb 10, 2023
- Reverted change of variable name in reduce_extract · bd2c6e3c
  pswain authored 2 years ago
  
  bd2c6e3c
- Minor tweaks to documentation in extraction · be416008
  pswain authored 2 years ago
  
  be416008
Jan 18, 2023
- refactor(aliby): Make default order consistent · d1d46476
  Alán Muñoz authored 2 years ago
  
  d1d46476
Jan 13, 2023
- Changes to docs in extractor in line with pylsp · e8d84cd5
  pswain authored 2 years ago
  
  e8d84cd5
Jan 12, 2023
- refactor: Remove unused code and obsolete tests · 47280533
  dadjavon authored 2 years ago
  
  Relates to #52
  47280533
Jan 11, 2023
- change(aliby): Replace print -> self._log · 6d5e3447
  Alán Muñoz authored 2 years ago
  
  6d5e3447
Jan 10, 2023
- feat(aliby): integrate logging into existing steps · de4c25e7
  Alán Muñoz authored 2 years ago
  
  de4c25e7