Commits · c0debe3e687b975b6eb5aa6e3683b381474d1a76 · Swain Lab / aliby / alibylite · GitLab

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Jan 07, 2023
- [WIP]feat(extraction): support metaless channels · c0debe3e
  Alán Muñoz authored 2 years ago
  
  c0debe3e
- [WIP]feat(tiler): support metaless local expts · 95675a7e
  Alán Muñoz authored 2 years ago
  
  95675a7e
- [WIP]refactor(pipeline): rm meta managemnet · 16faba8f
  Alán Muñoz authored 2 years ago
  
  16faba8f
- refactor(meta): metadata prop in ImageLocalBase · f531d195
  Alán Muñoz authored 2 years ago
  
  f531d195
- refactor(pipeline): overwrite before filecheck · 76048ae0
  Alán Muñoz authored 2 years ago
  
  76048ae0
Jan 06, 2023
- fix(Pipeline): incorporate new Dataset/ImageDir · fc286f99
  Alán Muñoz authored 2 years ago
  
  fc286f99
- refactor(dataset): create dispatch function · 13ed9a59
  Alán Muñoz authored 2 years ago
  
  13ed9a59
- fix(meta): cover empty case for flatten_dict · 9f00221f
  Alán Muñoz authored 2 years ago
  
  9f00221f
- chore(pyproject): bump version · 11c70db9
  Alán Muñoz authored 2 years ago
  
  v0.1.51
  
  11c70db9
- Merge branch '042-feat-minimal-metadata' into dev · c1b50963
  Alán Muñoz authored 2 years ago
  
  c1b50963
- [WIP] feat(dataset): add DatasetDir · 27fd9ffd
  Alán Muñoz authored 2 years ago
  
  27fd9ffd
- [WIP]feat(dataset): Support dataset without meta · 929d626f
  Alán Muñoz authored 2 years ago
  
  929d626f
Jan 05, 2023
- tests(Image): rename ImageLocal->ImageLocalOME · 6d00118d
  Alán Muñoz authored 2 years ago
  
  6d00118d
- feat(image): add name, dimorder to ImageDir · bd61641b
  Alán Muñoz authored 2 years ago
  
  bd61641b
- docs(meta): Improve warning no logfile message · 46725a28
  Alán Muñoz authored 2 years ago
  
  46725a28
- fix(meta): update given df.to_dict returning list · 2c1f79e6
  Alán Muñoz authored 2 years ago
  
  2c1f79e6
- refactor(Image): Rename ImageLocal->ImageLocalOME · 7206793a
  Alán Muñoz authored 2 years ago
  
  7206793a
- refactor(Image): Use ABC for BaseLocalImage · 522a0bf9
  Alán Muñoz authored 2 years ago
  
  522a0bf9
Jan 04, 2023
- chore(version): bump to v0.1.50 · 522635ce
  Alán Muñoz authored 2 years ago
  
  v0.1.50
  
  522635ce
- test(meta): add legacy meta parser · b0dd0888
  Alán Muñoz authored 2 years ago
  
  b0dd0888
- feat(meta): add legacy parser · 2088e952
  Alán Muñoz authored 2 years ago
  
  2088e952
- feat(meta): add swainlab parser · 5bd87154
  Alán Muñoz authored 2 years ago
  
  5bd87154
- docs(defaults): rename phluorin -> ratiometric · 4e4852dd
  Alán Muñoz authored 2 years ago
  
  4e4852dd
- [WIP]: feat(tiler): add ImageDir to imports · daa47679
  Alán Muñoz authored 2 years ago
  
  daa47679
- [WIP]feat(meta): bring back default get_data_lazy · ce07a333
  Alán Muñoz authored 2 years ago
  
  ce07a333
Jan 03, 2023
- [WIP]feat(meta): Require minimal metadata · b0b2b5b1
  Alán Muñoz authored 2 years ago
  
  b0b2b5b1
- fix(meta): allow metadata absence · 39d3a644
  Alán Muñoz authored 2 years ago
  
  39d3a644
- tweak(meta): Create ABC for ImageLocal · 1ebd37bd
  Alán Muñoz authored 2 years ago
  
  1ebd37bd
- tweak(meta): ensure sorted fnames when multimeta · d9d9c00e
  Alán Muñoz authored 2 years ago
  
  d9d9c00e
- docs(meta): add topfile docstring · fc62063c
  Alán Muñoz authored 2 years ago
  
  fc62063c
Dec 22, 2022
- tweak(trap): increase maximum valid region.mal · 97fb0355
  Alán Muñoz authored 2 years ago
  
  Changed threshold for maximum size to tile_size, instead of 0.8*tile_size
  97fb0355
- refactor(image): homogeneise local interfaces · e3f173b6
  Alán Muñoz authored 2 years ago
  
  e3f173b6
- refactor(ImageDir): add support for omero exports · 0a0ff940
  Alán Muñoz authored 2 years ago
  
  0a0ff940
Dec 21, 2022
- fix(metadata): fetch proper channels from legacy · 59ddddbc
  Alán Muñoz authored 2 years ago
  
  59ddddbc
- fix(test): rename channels into standard conv · 1ccd6313
  Alán Muñoz authored 2 years ago
  
  1ccd6313
- fix(test): rename extraction channels to standard · 8f9c41df
  Alán Muñoz authored 2 years ago
  
  8f9c41df
Dec 20, 2022
- [WIP] refactor(pipe): generalise metadata usage · 6f2b55bc
  Alán Muñoz authored 2 years ago
  
  6f2b55bc
- docs(metadata): update spec · fa3f9f0f
  Alán Muñoz authored 2 years ago
  
  fa3f9f0f
- docs(specs): add draft of metadata specifications · a8c1bc97
  Alán Muñoz authored 2 years ago
  
  a8c1bc97
- refractor(baby_client): remove hard-coded bf · f6002a01
  Alán Muñoz authored 2 years ago
  
  f6002a01