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Created with Raphaël 2.2.012Dec97628Nov2423141032131Oct29272625201913126229Sep14Aug12111097628Jul26252421201712113230Jun292827924May2319171628Apr274323Mar21201716159762128Feb2724211716141110986231Jan30282726242318171613121110987654322Dec212019130Nov221817161427Oct232018171413111075430Sep292827262422update(pipeline): write version of Baby to logtidy(imageviewer): addedl localimageviewer; moved functions to base classbug(tiler): tile_locs should tile_locations in from_h5tidy(pipeline): removed haystack; added initialise_tf to pipelinechange(retained): default cutoff is 0feat(grouper): add "mothers" mode to concat_signalchange(bud_metric): Signal only for buds; mother_label droppedreverted(signal): no picking & merging in get_raw; use get insteadfeat(pipeline): outputs version of BABY being usedbug(apply_merges): merges implementing on more than valid_mergesbug(grouper): tinterval failing with arraysbug(signal): timeinterval can now be a list or an intMerge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlitefeat(metadata): added timeinterval to minimal_meta_swainlabbug(bud_metric): indentation error causing crash when no bud_signalbug(tiler): find_channels_per_position worked for one type of metadata onlyfeat(Signal): returns None rather than error if data is missingreverted baby_client; feat(swainlab_parser): tolerate non-ascii charactersbud_metric returns all cells; Signal's get_raw give merges and picks as options.fix(abc.update): to update a param in an existing param dictfeat(babysitter): removed pixel_size; docs(bud_metric)feat(babysitter): added pixel_size to BabyParametersfix(baby_sitter): parameters passed to Baby's brainadded baby_sitter to run new version of BABYextended bgsub to multichannel functionsmade background subtraction a separate function in extractorupdated pipeline to no longer call defaultsremoved defaults because of global_parameters; functions to extractordocs to loggingdocs for metadatarenamed dunder routines in indexingrenamed processor; some tidyingremoved chainer; NameGrouper is now Grouperpartway removal of chainerchanged channels in tiler to be position dependentmastermasteradded signal's retained cutoff to global_parametersadded global_parameters to define all hardcoded parameterscleaned and documented tilerchanged load_attributes to load_metachanged max5px to max5px_median