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Created with Raphaël 2.2.018Apr166520Mar727Feb24232219171615138130Jan18171623Dec222119151297628Nov2423141032131Oct29272625201913126229Sep14Aug12111097628Jul26252421201712113230Jun292827924May2319171628Apr274323Mar21201716159762128Feb2724211716141110986231Jan30282726242318171613121110987654322Dec212019130Nov221817161427Oct232018171413111075430Sep2928272624change(pipeline): refactoredchange(swainlab_parser): removed end_triggerUpdate file swainlab_parser.pyChange to swainlab_parser avoids an encoding error with some datasets that prevents parsingUpdate imageViewer.pychange(metadata): searching for log filesfix(broken_pipeline): removed breakpointfix(pipeline): deleted breakpointchange(pipeline): works for all Baby versionsrevert(pipeline): reverted pipeline; deleted binfix(pipeline): baby.errors.BadOutput caughtchange(processABC): _log to logchange(pipeline): changed logging stream_levelfix(baby_sitter): bug in getdatachange(pipeline): channels ordered following OMEROchange(tiler): channels can be stringsfix(GPU issue): bug fixed in calling babywriternewpipeline branchchange(pipeline): multiprocessingfix(pipeline): check exists before deleting old h5refactor(pipeline): removed tqdm callrefactor(pipeline): cleaned multiprocessing in runrefactor(pipeline): removed refs to sessionrefactor(pipeline): explicit pipefix(validate_lineage): for buds with two mothersfix(metadata): compare dataframe with Nonechange(__init__.py): added __version__Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlitefix(concat_one_signal): ensured kwargs passed to signal.get_rawchange(signal): remove __getitem__; get is clearertweak(bud_metric): to docsfix(grouper): more for tmax_in_mins_dict; comments on concat_one_signalfeature(grouper, signal): added tmax_in_mins_dict and tmax_in_minschange(indexing): validate_lineage always warns if lineage misassignedfeature(Grouper): added specifying positions in concat_signalfeature(signal): make check on lineage assignment by validate_lineage optionalfix(indexing): fixed test_mismatch for daughters in validate_lineagefix(grouper): perform check if dataframe is Nonebug(metadata): removed confusing Warning about missing .log filesMerge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite