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Swain Lab
aliby
alibylite
Graph
a55d8deaac99a07274b6faf1927d240077201ff6
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Branches
4
cellpose
dev
protected
devlite
default
master
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20
v0.1.64
v0.1.61
v0.1.60
v0.1.59
v0.1.58
v0.1.57
v0.1.56
v0.1.55
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v0.1.50
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v0.1.46
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v0.1.43
v0.1.41
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Feb
fix(ImageDir): sort dimensions. Pipeline runs
fix(pipeline): convert path to str before storing
feat(DynamicWriter): Only load meta if file exists
fix(dataset): pass kwargs as-is for ome dataset
refactor(image): self.meta -> self._meta
[WIP]feat(extraction): support metaless channels
[WIP]feat(tiler): support metaless local expts
[WIP]refactor(pipeline): rm meta managemnet
refactor(meta): metadata prop in ImageLocalBase
refactor(pipeline): overwrite before filecheck
fix(Pipeline): incorporate new Dataset/ImageDir
refactor(dataset): create dispatch function
fix(meta): cover empty case for flatten_dict
chore(pyproject): bump version
v0.1.51
v0.1.51
Merge branch '042-feat-minimal-metadata' into dev
[WIP] feat(dataset): add DatasetDir
[WIP]feat(dataset): Support dataset without meta
tests(Image): rename ImageLocal->ImageLocalOME
feat(image): add name, dimorder to ImageDir
docs(meta): Improve warning no logfile message
fix(meta): update given df.to_dict returning list
refactor(Image): Rename ImageLocal->ImageLocalOME
refactor(Image): Use ABC for BaseLocalImage
chore(version): bump to v0.1.50
v0.1.50
v0.1.50
test(meta): add legacy meta parser
feat(meta): add legacy parser
feat(meta): add swainlab parser
docs(defaults): rename phluorin -> ratiometric
[WIP]: feat(tiler): add ImageDir to imports
[WIP]feat(meta): bring back default get_data_lazy
[WIP]feat(meta): Require minimal metadata
fix(meta): allow metadata absence
tweak(meta): Create ABC for ImageLocal
tweak(meta): ensure sorted fnames when multimeta
docs(meta): add topfile docstring
tweak(trap): increase maximum valid region.mal
refactor(image): homogeneise local interfaces
refactor(ImageDir): add support for omero exports
fix(metadata): fetch proper channels from legacy
fix(test): rename channels into standard conv
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