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Created with Raphaël 2.2.01May30Apr2625231918166520Mar727Feb24232219171615138130Jan18171623Dec222119151297628Nov2423141032131Oct29272625201913126229Sep14Aug12111097628Jul26252421201712113230Jun292827924May2319171628Apr274323Mar21201716159762128Feb2724211716141110986231Jan30282726242318171613121110987654322Dec212019130Nov221817161427Oct232018171413111075430Sep2928272624change: set to list for new pandas versionchange: removed many optional functionslogfile_root_name againfix(pipeline): ensure logfile_root_name is strchange(pipeline): logfile name specifies experimentagora.logging to agora.logging_timerminor tweakschange(pipeline): added OMERO_channels as inputfix(PipelineParameters): type of tpsrefactor: metadata and imagechange(swainlab_parser): conditions on reading headernew branchchange(pipeline): refactoredchange(swainlab_parser): removed end_triggerUpdate file swainlab_parser.pyChange to swainlab_parser avoids an encoding error with some datasets that prevents parsingUpdate imageViewer.pychange(metadata): searching for log filesfix(broken_pipeline): removed breakpointfix(pipeline): deleted breakpointchange(pipeline): works for all Baby versionsrevert(pipeline): reverted pipeline; deleted binfix(pipeline): baby.errors.BadOutput caughtchange(processABC): _log to logchange(pipeline): changed logging stream_levelfix(baby_sitter): bug in getdatachange(pipeline): channels ordered following OMEROchange(tiler): channels can be stringsfix(GPU issue): bug fixed in calling babywriternewpipeline branchchange(pipeline): multiprocessingfix(pipeline): check exists before deleting old h5refactor(pipeline): removed tqdm callrefactor(pipeline): cleaned multiprocessing in runrefactor(pipeline): removed refs to sessionrefactor(pipeline): explicit pipefix(validate_lineage): for buds with two mothersfix(metadata): compare dataframe with Nonechange(__init__.py): added __version__Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite