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Created with Raphaël 2.2.02Mar128Feb2724211716141110986231Jan30282726242318171613121110987654322Dec212019130Nov221817161427Oct232018171413111075430Sep2928272624222119151487632129Aug2523201916151211954323Jul21181514138732130Jun292827242321201716Merge remote-tracking branch 'origin/imageviewer' into imageviewerchange(vis_tools): refactor _overlay_mask_tilechore(pyproject): make pytorch optionalchore(pyproject): update opencvclean(writer): remove timed importrefactor(pyproject): add optional groups and babyfeat(plot): add plot_overlayclean(aliby): Improve docs/cleanupMerge branch '058-tutorial-run-pipeline' into 'dev'docs(web): options for running pipeline via CLI & scriptdocs(image/tiler/vis_tool): improve typingfeat(plot): add plot.py utilschore(pyproject): add readchar as dev depdocs(cells): improve cells documentationfeat(vis_tools): add overlay_masks_tilesdocs(cells): simplify docsfix(extraction): tests account for dimension usedfeat(cells): add _cell_tp_matrixfix(vis_tools): add rescale and crop_maskdocs(tiler): improve typingfix(vis_tool): concat_dims supports negative indexchore(pyproject): add git-strategy as dev depfix(test): adjust custom function testsfeat(aliby): add vis_toolsfix(extractor): adjust number of cell labelsdocs(Cells): Document all complex methodsdocs(distributors): document change in cell dimfix(distributors): simplify using cell axis 0[WIP]feat(cells): add cell samplingchange(cells): stack cellmasks in dim 0chore(tomlock): add jupytext to dev groupfeat(cells): add at_times methodfeat(image): Add instatiate_image wrapperdocs(tiler): refine get_tp_data docstringdocs(extraction): Include dimension informationrefactor(swainlab_parser): Increase fail infofix(imzarr): temporarily hardcode dimorderdocs(tiler): remove image typingdocs(Dataset): Document OmeroDatasetfix(tiler): Set default size_c metadata