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Swain Lab
aliby
alibylite
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e8e8347c488f7287c75af751b02deb0f1e1a1670
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4
cellpose
dev
protected
devlite
default
master
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docs(cells): simplify docs
fix(extraction): tests account for dimension used
feat(cells): add _cell_tp_matrix
fix(vis_tools): add rescale and crop_mask
docs(tiler): improve typing
fix(vis_tool): concat_dims supports negative index
chore(pyproject): add git-strategy as dev dep
fix(test): adjust custom function tests
feat(aliby): add vis_tools
fix(extractor): adjust number of cell labels
docs(Cells): Document all complex methods
docs(distributors): document change in cell dim
fix(distributors): simplify using cell axis 0
[WIP]feat(cells): add cell sampling
change(cells): stack cellmasks in dim 0
chore(tomlock): add jupytext to dev group
feat(cells): add at_times method
feat(image): Add instatiate_image wrapper
docs(tiler): refine get_tp_data docstring
docs(extraction): Include dimension information
refactor(swainlab_parser): Increase fail info
fix(imzarr): temporarily hardcode dimorder
docs(tiler): remove image typing
docs(Dataset): Document OmeroDataset
fix(tiler): Set default size_c metadata
feat(imviewer): add zarr compatibility
docs(install): Fix typos
Included instructions for poetry dev
docs(bin): add gptdocs to cli function
fix(utils): remove unnecessary import in imageView
refactor/docs(utils): move and autodoc stretch_img
Merge remote-tracking branch 'origin/dev' into dev
docs(readme): update docs and api index
Merge branch 'pp_docs' into 'dev'
chore(pyproject): add zarr dependency
Merge branch 'docs-update-after-omero-refactor' into 'dev'
"Added detailed error message when dir missing"
Reverted change of variable name in reduce_extract
Minor tweaks to documentation in extraction
updated docs for tiler: TRAPS -> TILES throughout
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