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Created with Raphaël 2.2.012Mar12Feb111095322Dec26Nov30Oct29111020Sep7616Aug86226Jul328Jun2726252422211918171614137630May222172130Apr2625231918166520Mar727Feb24232219171615138130Jan18171623Dec222119151297628Nov2423141032131Oct29272625201913126229Sep14Aug12111097628Jul26252421201712113230Jun292827924May2319171628Apr274323Mar21201716159762128Feb2724211716141110986231Jan30282726242318171613121110987654322Dec212019Edit README.mddevlitedevliteEdit README.mdEdit README.mdEdit README.mdMerge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlitechange: updated to 3.11 with baby 0.30.7change(pipeline): added default local directorychange(extractor): channels to cell functionsMerge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlitechange: updated pyproject.tomlEdit README.mdchange(extractor): Brightfield to multichannel fnsdoc(alibylite.org)change: removed py-find-1st, more-itertoolsdoc: more to alibylite.orgchange(signal): ensure retained uses cutoffremove(local_data_loaders): from extractionremove(lineage): rm lineage and track_abrefactor: kymograph to multiindex_utilsremove(track): rm track; no longer usedfix(tiler): initial_tp used when getting imagefeature: added initial_tpchange(signal): crash if no lineage info in h5feature(grouper): add print_signals_by_positionchange(global_settings): max_tps -> 1500 from 1000change(examples): added run_zarrchange(grouper): prevent crash when signal missingchange(bridge): added docschange: created tiles; traps -> process_trapschange(pipeline): tps redefined if too largechange: no obligatory run method in ProcessABCfix(signal): error in cols_to_minsrefactor: split dynamic_writer from writerchange: add global_settings.default_time_intervalfeature(PipelineParameters): channels in generalchange: remove total and total_squared as defaultschange: added total_squared to cell.pyfix(metadata_legacy): wrong type in time_settingschange(grouper): removed annoying tqdmchange(grouped): added all_available