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Swain Lab / aliby / aliby-mirror

Arin Wongprommoon
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WHY IS THIS CHANGE NEEDED?: - when tiler.initialise_traps() is invoked, "No valid tiling regions found" is raised from traps.segment_traps() (aliby.tile.traps). HOW DOES THE CHANGE SOLVE THE PROBLEM?: - the image called by segment_traps() was a blank image. - this was because tiler.initialise_traps() uses the first timepoint to define the initial image (line 400 in tiler.py). - the first timepoint was a blank image because ImageDummy.pad_array() added zero arrays BEFORE the input array. - so fixed it by reversing the behaviour of ImageDummy.pad_array() - and modified the test_image test to reflect this change. WHAT SIDE EFFECTS DOES THIS CHANGE HAVE?: - none known -- only potential effect is the test, which was modified EVIDENCE THAT COMMIT WORKS: - test_image passed
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