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Swain Lab
wela
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5530e3f8
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5530e3f8
authored
1 year ago
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pswain
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# Wela
A package to analyse output from aliby.
Wela uses the h5 files created by aliby to create a dataframe and save this dataframe as a text file.
With Wela, you can use a Gaussian process to generate single-cell growth rates.
Wela includes plotting routines for common tasks, such as kymographs and plotting single lineages for one ALCATRAS trap.
## Installing
Clone the gitlab repository and install with poetry.
## Getting started
There are example scripts in
`wela/examples`
.
Use
-
`create_tsv.py`
to see how to generate a tsv file of the data
-
`plot_kymograph.py`
to see how to generate a kymograph
-
`run_gr.py`
to learn how to estimate single-cell growth rates.
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