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Commit 5530e3f8 authored by pswain's avatar pswain
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Update README.md

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# Wela
A package to analyse output from aliby.
Wela uses the h5 files created by aliby to create a dataframe and save this dataframe as a text file.
With Wela, you can use a Gaussian process to generate single-cell growth rates.
Wela includes plotting routines for common tasks, such as kymographs and plotting single lineages for one ALCATRAS trap.
## Installing
Clone the gitlab repository and install with poetry.
## Getting started
There are example scripts in `wela/examples`.
Use
- `create_tsv.py` to see how to generate a tsv file of the data
- `plot_kymograph.py` to see how to generate a kymograph
- `run_gr.py` to learn how to estimate single-cell growth rates.
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