change(run_wela): tpt_end -> tp_end

examples/run_wela.py

@@ -7,7 +7,7 @@ from wela.imageviewer import ImageViewer, get_h5files
 from wela.plotting import kymograph
 from wela.sorting import sort_by_budding
 
-h5dir = "/home/ianyang/alibylite/data/" # Change to your h5 directory
+h5dir = "/home/ianyang/alibylite/data/"  # change to your h5 directory
 omids = [
     "469_2022_11_15_morph_5cham_hog1_lte1_htb2_vph1_bud3_01",
     # "2003_2024_01_29_2pc_switch_00",
@@ -21,7 +21,7 @@ server_info = {
 }
 view = True
 # pick the experiment to analyse
-omid = 469 # expt_id e.g. 469
+omid = 469  # expt_id e.g., 469
 
 # 1. Run with view=True to check visually that aliby has worked correctly.
 # 2. Set key_index, the signal you are most interested in.
@@ -33,13 +33,11 @@ if view:
     position = h5files[0]
     h5file = f"{h5dir}{omero_name}/{position}"
     iv = ImageViewer.remote(h5file, server_info, omid)
-    tpt_end = 10
+    tp_end = 10
     no_cells = 6
     iv.view(
-        trap_ids=iv.sample_traps_with_cells(
-            tpt_end=tpt_end, no_cells=no_cells
-        ),
-        tpt_end=tpt_end,
+        trap_ids=iv.sample_traps_with_cells(tp_end=tp_end, no_cells=no_cells),
+        tpt_end=tp_end,
         channels_to_skip=["cy5"],
         no_rows=2,
     )
@@ -66,4 +64,4 @@ else:
 
     # plot means
     sns.relplot(data=dl.df, x="time", y=key_index, kind="line", hue="group")
-    plt.show()
\ No newline at end of file
+    plt.show()