import edthesis to gitlab

.gitignore

+*~

README.md

+Template for a LaTeX PhD UoE Thesis.
+====================================
+
+Author: Magnus Hagdorn
+
+This template setup allows you to produce:
+* a thesis that adheres to the UoE regulations
+  (at least my interpretations of them and no-one complained when
+  I submitted mine)
+* a nicely formatted pdf/ps version of the same thesis
+  with single line spacing, etc
+* individual documents for each chapter
+
+Indivdual chapters reside in their own directories. (Re)-Define the macro `\dir`
+to the relative path where files for the current chapter can be found. You can
+then use `\dir` to include files or graphics, e.g.
+
+```
+\newcommand{\dir}{theory}
+\input{\dir/theory.tex}
+\epsfig{file=\dir/images/test.eps,width=0.5\textwidth}
+```
+
+Using this macro allows you to distribute files over a number of directories.
+
+The common directory
+--------------------
+This directory contains files used by all the documents:
+* the packages.tex files contains a lits of packages used
+* the definitions.tex file contains settings and macros
+
+The preface directory
+---------------------
+contains files for the preface.
+
+The template directory
+----------------------
+This directory should be copied for each chapter. Rename the sub directory 
+accordingly. All files should be kept in this sub directory. If you want to
+produce a document for the individual chapter, run latex on the chapter.tex
+file.
+
+The thesis directory
+--------------------
+This directory pulls files from the preface and the chapter directories together
+to produce the complete thesis. There are 3 different top level files:
+* latex ed_thesis.tex
+  to produce official 1.5 (?) spaced thesis which adheres to the regulations
+* latex nicepdf_thesis.tex
+  to produce a dvi file to be processed using dvipdft. The resulting pdf will
+  have colour hyperlinks.
+* latex niceps_thesis.tex
+  to produce a single spaced thesis without the hyperlinks for printing
+
+All three top level files include the thesis.tex file. This file includes the
+actual preface and chapter files. 
+
+You can use the `\ifthenelse` macro to do specific things for either the standard
+or nice thesis version, e.g.
+```
+\ifthenelse{\boolean{edthesis}}
+ {
+   Do something specific for the offical version 
+}
+{
+   Do something else for the nice version
+}
+```
+
+
+If you have any questions or problems contact it.geos@ed.ac.uk.

chapter1/chapter.tex

+\documentclass[12pt,english,a4paper]{report}
+\input{../common/packages.tex}
+\input{../common/definitions.tex}
+
+\setlength{\textheight}{24cm}
+\setlength{\headsep}{0cm}
+
+\newcommand{\dir}{chapter}
+
+\begin{document}
+\title{Chapter 1}
+\author{Una Person}
+\date{
+  \today\\
+  \vspace{2cm}
+  {\centering\footnotesize\begin{tabular}[c]{c}
+      \epsfig{file=../preface/2Line2ColCMYK_CS3.eps,height=3cm}\\
+      School of GeoSciences\\
+      Grant Institute\\
+      West Mains Road\\
+      Edinburgh, EH9 3JW\\
+      Scotland
+    \end{tabular}}
+  }
+\maketitle
+\tableofcontents
+\input{\dir/chapter1.tex}
+%\clearpage
+%\listoffigures
+%\listoftables
+%\listofalgorithms
+%\newpage
+%\bibliography{}
+\end{document}

chapter1/chapter/chapter1.tex

+\chapter{Template Chapter}
+This is a template chapter. Lots of exciting stuff should go in here\footnote{testing a footnote}.
+
+
+\begin{figure}[htbp]
+  \centering
+  \includegraphics[width=0.7\textwidth]{\dir/figs/geek_flow_chart_nyt.eps}
+  \caption{an example figure...}
+  \label{fig.example}
+\end{figure}

chapter2/chapter.tex

+\documentclass[12pt,english,a4paper]{report}
+\input{../common/packages.tex}
+\input{../common/definitions.tex}
+
+\setlength{\textheight}{24cm}
+\setlength{\headsep}{0cm}
+
+\newcommand{\dir}{chapter}
+
+\begin{document}
+\title{Chapter 1}
+\author{Una Person}
+\date{
+  \today\\
+  \vspace{2cm}
+  {\centering\footnotesize\begin{tabular}[c]{c}
+      \epsfig{file=../preface/2Line2ColCMYK_CS3.eps,height=3cm}\\
+      School of GeoSciences\\
+      Grant Institute\\
+      West Mains Road\\
+      Edinburgh, EH9 3JW\\
+      Scotland
+    \end{tabular}}
+  }
+\maketitle
+\tableofcontents
+\input{\dir/chapter2.tex}
+%\clearpage
+%\listoffigures
+%\listoftables
+%\listofalgorithms
+%\newpage
+%\bibliography{}
+\end{document}

chapter2/chapter/chapter2.tex

+\chapter{Template Chapter}
+This is a template chapter. Lots of exciting stuff should go in here.

common/definitions.tex

+\setlength{\headheight}{15pt}
+
+\makeglossary
+\newcommand{\pd}{\partial}
+\renewcommand{\vec}{\boldsymbol}
+\DeclareMathOperator{\Ber}{Ber}
+\DeclareMathOperator{\Bei}{Bei}
+\DeclareMathOperator{\Ker}{Ker}
+\DeclareMathOperator{\Kei}{Kei}
+\DeclareMathOperator{\integer}{int}
+\DeclareMathOperator{\floor}{floor}
+\DeclareMathOperator{\var}{var}
+\DeclareMathOperator{\const}{constant}
+\DeclareMathOperator{\maxval}{max}
+%\bibliographystyle{plainnat}
+\bibliographystyle{jmb}
+
+% change font for captions
+\renewcommand{\captionfont}{\sffamily}
+\renewcommand{\captionlabelfont}{\bf}
+
+% change font for chapter/section headings
+%\allsectionsfont{\sffamily}
+
+% funky graphics + text in lr bottom
+\begingroup% 
+\ifx\MakeISMBox\undefined%
+\gdef\MakeISMBox#1#2#3{%
+  \begin{overpic}[width=#1]{#2}%
+    %\put(0,0){\includegraphics[width=#1]{#2}}%
+    \put(98,2){\makebox(0,0)[br]{#3}}%
+  \end{overpic}}%
+\fi\endgroup%
+
+% workaround for color in ed_thesis
+\begingroup% 
+\ifx\color\undefined%
+\gdef\color[#1]#2{}%
+\fi\endgroup%
+
+% workaround for href in ed_thesis
+\begingroup% 
+\ifx\href\undefined%
+\gdef\href#1#2{#2}%
+\fi\endgroup%
+
+% defining units for nomenclature packages
+\newcommand{\nomunit}[1]{%
+%  \renewcommand{\nomentryend}{\hspace*{\fill}[#1]}%
+}
+
+% Alternative style of head and foot
+\pagestyle{fancy}% Used when using fancyhdr.sty
+\renewcommand{\headrulewidth}{0.4pt}
+\renewcommand{\footrulewidth}{0pt}
+\renewcommand{\chaptermark}[1]{%
+ \markboth{\MakeUppercase{%
+ \chaptername} \ \thechapter.%
+ \ #1}{}}
+\renewcommand{\sectionmark}[1]{%
+ \markright{ \ \thesection%
+ \ #1}{}}
+
+%\rhead{\thepage}
+\fancyhead[LE,RO]{\thepage}
+\fancyhead[LO]{\sl \leftmark}
+\fancyhead[RE]{\sl \rightmark}
+\fancyfoot{}
+
+%Tidy up hyphenations as best as possible
+\pretolerance = 600 % covers most paragraphs
+\tolerance = 7000 % covers the nasty cases
+
+%Tidy up hanging sentences as best as possible
+\widowpenalty=10000
+
+% To get the correct margins for the regulations for psglg1 and psglg3
+\setlength{\oddsidemargin}{1.35cm} %margins set up for psglg1
+\setlength{\evensidemargin}{-0.1cm}
+\setlength{\topmargin}{0cm}
+\setlength{\textwidth}{14.55cm}
+\setlength{\textheight}{22.3cm}
+

common/packages.tex

+\usepackage{fancyhdr}% Use titlesec to put Chapter title on right
+\usepackage{babel}
+\usepackage{a4}
+%\usepackage{sectsty}
+\usepackage[round]{natbib}
+\usepackage{amsfonts}
+\usepackage{amsthm}
+\usepackage{eucal}
+\usepackage[intlimits]{amsmath}
+\usepackage{epsfig}
+\usepackage{graphicx}
+\usepackage{lscape}
+\usepackage{longtable}
+\usepackage{rotating}
+%\usepackage{supertabular}
+%\usepackage{nomencl}
+\usepackage[percent]{overpic}
+%\usepackage{tocbibind}
+\usepackage{caption}

create_tarball.sh

+#!/bin/bash
+
+# create a tar ball of all the files that are under subversion control
+
+# produce a list of files to include
+for i in $(svn status -v | grep -v create_tarball.sh | awk '{if (NF>3) print $NF}'); do if [ -f $i ]; then echo $i; fi; done > include_files
+
+tar -cvzf thesis.tar.gz -T include_files

preface/abstract.tex

+The abstract...

preface/acknowledgements.tex

+\chapter{Acknowledgements}
+\markboth{\MakeUppercase{Acknowledgements}}{\MakeUppercase{Acknowledgements}}
+
+It's nice to acknowledge some people...

preface/declaration.tex

+\chapter{Declaration}
+\vspace*{2\baselineskip}
+I declare that this thesis has been composed 
+solely by myself and that it has not been submitted, either in whole or
+in part, in any previous application for a degree.
+Except where otherwise acknowledged, the work presented is entirely my
+own.
+\vspace{6\baselineskip}\\
+\begin{flushright}
+\hspace*{\fill}
+Una Person
+\newline
+September 2003
+\end{flushright}
+
+
+\cleardoublepage

preface/title.tex

+\thispagestyle{empty}
+
+\begin{minipage}{\textwidth}
+\end{minipage}
+\begin{center}
+\vspace{2cm}
+{ \Huge A School of GeoScience PhD Thesis using {\LaTeX} 
+  \par
+  \vspace{0.5cm} 
+{\Large Una Person \par}
+}
+\end{center}
+\vfill
+\begin{center}
+\vspace{6cm}    
+\centerline{\epsfig{file=\dir/2Line2ColCMYK_CS3.eps,width=0.35\textwidth}}
+\vspace{0.5cm}
+Thesis submitted in fulfilment of\\
+the requirements for the degree of\\ 
+Doctor of Philosophy\\ 
+to the\\
+University of Edinburgh --- 2003
+\end{center}
+
+\newpage
+\thispagestyle{empty}
+
+

thesis/ed_thesis.tex

+\documentclass[openright,twoside,a4paper,english,12pt]{report}
+
+%% ==========================
+%% main LaTeX set up for a Geology and Geophysics thesis keeps evolving into unknown
+%% yet funky beasties. I borrowed this set-up from Kathryn Hardacre who got it from 
+%% Jon Perry. Undoubtedly, I will add some extras as well
+%% magi
+
+\usepackage{edthesis}
+\input{../common/packages.tex}
+
+%% some handy macros
+\input{../common/definitions.tex}
+
+%========================= ALTERATIONS ========================= 
+
+%Paragraphs
+\setlength{\parindent}{0em}
+\setlength{\parskip}{\baselineskip}
+
+%Alternative methods
+%\lefthyphenmin=63
+%\righthyphenmin=63
+%\hyphenpenalty=10000
+
+%To introduce 1.5 spacing
+\renewcommand{\baselinestretch}{1.5}
+
+\begin{document}
+\newboolean{edthesis}
+\setboolean{edthesis}{true}
+%\setboolean{edthesis}{false}
+
+\input{thesis.tex}
+\end{document}