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Here you will find instructions on how to perform and analyse Molecular Dynamics simulations of DNA with different models.
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This is a repo for codes to simulate trans-grabbing loop extrusion factors (developed by Andrea Bonato)
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Codes to simulate condensins and loop extruders that can grab polymer segments in 3D. Developed by Andrea Bonato
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s1886313 / tensorflow
Apache License 2.0Computation using data flow graphs for scalable machine learning
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Ta-dah / Ta-dah.MLIP
GNU General Public License v3.0 or laterUpdated -
Ta-dah / Ta-dah.LAMMPS
GNU General Public License v3.0 or laterUpdated -
Machine learning software and library for inter-atomic potentials development
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Instruction on setting up a VScode project of sycl on a Linux system (ubuntu)
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