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mwham
committed
details:
- algorithm:
platform: illumina
quality_format: standard
aligner: bwa
align_split_size: false
trim_reads: fastp
adapters: [nextera2, polyg]
mark_duplicates: true
realign: false
recalibrate: true
effects: vep
effects_transcripts: all
variantcaller: gatk-haplotype
indelcaller: false
remove_lcr: true
tools_on:
- vep_splicesite_annotations
analysis: variant2
genome_build: hg38
upload:
dir: outputs/bcbio/results