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Commit 1532172e authored by ameyner2's avatar ameyner2
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Fixed file paths

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docs/Software_installation_ultra2.md
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......@@ -106,10 +106,10 @@ VerifyBamID \
--Reference ../../bcbio/genomes/Hsapiens/hg38/seq/hg38.fa
# rename the files to the correct format
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.bed 1000g.phase3.100k.b38.vcf.gz.dat.bed
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.mu 1000g.phase3.100k.b38.vcf.gz.dat.mu
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.PC 1000g.phase3.100k.b38.vcf.gz.dat.V
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.UD 1000g.phase3.100k.b38.vcf.gz.dat.UD
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.bed 1000g.phase3.100k.b38.vcf.gz.dat.bed
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.mu 1000g.phase3.100k.b38.vcf.gz.dat.mu
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.PC 1000g.phase3.100k.b38.vcf.gz.dat.V
mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.UD 1000g.phase3.100k.b38.vcf.gz.dat.UD
# move them into the correct location, backing up the original resource folder
cd /home/u035/u035/shared/software/bcbio/anaconda/share/verifybamid2-1.0.6-0
......
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