Initial commit of NextFlow pipeline - test data and MD5 checks (2ca0e60c) · Commits · igmmbioinformatics / trio-whole-exome

Commit 2ca0e60c authored 3 years ago by mwham

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Initial commit of NextFlow pipeline - test data and MD5 checks

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.gitignore 2 additions, 0 deletions

.gitignore
README.md 26 additions, 0 deletions

README.md
environment.yml 11 additions, 0 deletions

environment.yml
pipeline/file_checks.nf 116 additions, 0 deletions

pipeline/file_checks.nf
pipeline/lib/PipelineException.groovy 12 additions, 0 deletions

pipeline/lib/PipelineException.groovy
pipeline/main.nf 105 additions, 0 deletions

pipeline/main.nf
tests/assets/input_data/Readme.md 15 additions, 0 deletions

tests/assets/input_data/Readme.md
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_1.fastq.count 0 additions, 0 deletions

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tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_2.fastq.count 0 additions, 0 deletions

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tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_2.fastq.count 0 additions, 0 deletions

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tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_1.fastq.count 0 additions, 0 deletions

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tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_2.fastq.count 0 additions, 0 deletions

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tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_1.fastq.count 0 additions, 0 deletions

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