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Commit 39a93ee5 authored by ameyner2's avatar ameyner2
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Update tool_and_data_change_tracking.md

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1 merge request!3Ultra 2 SOP/doc updates
......@@ -16,3 +16,29 @@ grabix | 0.1.8 | 0.1.8 | 0.1.8 |
vt | 2015.11.10 | 2015.11.10 | 2015.11.10 |
vase | 0.2.4 | 0.4 | 0.4.2 | Identification of de novo variants
rtg-tools | 3.10.1 | 3.11 | 3.11 | Used for GIAB concordance analysis
Resource | bcbio-1.1.5 (ultra) | bcbio-1.2.3 (ultra) | bcbio-1.2.8 (ultra2) | Notes
---------|-------------|-------------|-------------|------
seq | 1000g-20150219_1 | 1000g-20150219_1 | 1000g-20150219_1 |
bwa | 1000g-20150219 | 1000g-20150219 | 1000g-20150219 |
ccds | r20 | r20 | r20 |
capture_regions | 20161202 | 20161202 | 20161202 |
coverage | 2018-10-16 | 2018-10-16 | 2018-10-16 |
prioritize | 20181227 | 20181227 | 20181227 |
dbsnp | 151-20180418 | 153-20180725 | 154-20210112 | VCF annotations
hapmap_snps | 20160105 | 20160105 | 20160105 |
1000g_omni_snps | 20160105 | 20160105 | 20160105 |
ACMG56_genes | 20160726 | 20160726 | 20160726 |
1000g_snps | 20160105 | 20160105 | 20160105 |
mills_indels | 20160105 | 20160105 | 20160105 |
1000g_indels | 2.8_hg38_20150522 | 2.8_hg38_20150522 | 2.8_hg38_20150522 |
clinvar | 20190513 | 20190513 | 20210110 | VCF annotations
qsignature | 20160526 | 20160526 | 20160526 |
genesplicer | 2004.04.03 | 2004.04.03 | 2004.04.03 |
effects_transcript | 2017-03-16 | 2017-03-16 | 2017-03-16 |
varpon | 20181105 | 20181105 | 20181105 |
vcfanno | 20190119 | 20190119 | 20210204 | VCF annotations
viral | 2017.02.04 | 2017.02.04 | 2017.02.04 |
gnomad genomes | 2.1 | 3.0 | 3.1.1 | VCF annotations
gnomad exomes | 2.1 | 2.1 | 2.1.1 | VCF annotations
dbnsfp | 3.5a | not installed | not installed | VCF annotations, not used
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