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Commit ba5a6bc7 authored by ameyner2's avatar ameyner2
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Removed gnomad datatarget from 2nd installation command.

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......@@ -40,7 +40,20 @@ cd ../../genomes/Hsapiens/hg38/txtmp/
mv variation/gnomad* ../variation/
```
Now restart the installation as above.
Now restart the installation without the gnomad datatarget.
```
cd /home/u035/project/software/install
wget https://raw.github.com/bcbio/bcbio-nextgen/master/scripts/bcbio_nextgen_install.py
ulimit -n 4096
python bcbio_nextgen_install.py /home/u035/project/software/bcbio \
--tooldir /home/u035/project/software/bcbio/tools \
--genomes hg38 --aligners bwa \
--datatarget variation \
--datatarget vep --datatarget dbnsfp --cores 32 &> bcbio_install_YYYYMMDDhhmm.log
```
Put a fake file name for genotype2phenotype field in genomes/hg38/seq/hg38-resources.yaml
......
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