Add ExomeDepth to cnv_calling.nf, arguments set in command

assets/trio_whole_exome_bcbio_template.yaml

nextflow.config

pipeline/ExomeDepth_assets/ExomeDepth_basic_own_vignette.R

pipeline/ExomeDepth_assets/HG003_4_paths.txt

...ne/ExomeDepth_assets/Recalibrated_target_paths_female.txt

...line/ExomeDepth_assets/Recalibrated_target_paths_male.txt

pipeline/ExomeDepth_assets/exome_calls_HG002.recal.bam.csv

pipeline/ExomeDepth_assets/extract_parents.sh

pipeline/cnv_calling.nf