Commits · 4e1a5a34cd989a55b26e21c161d3be2e43b6e374 · igmmbioinformatics / trio-whole-exome

Aug 18, 2021
- Skipping dev tools upgrade - fixed in v1.2.8 bcbio · 4e1a5a34
  ameyner2 authored 3 years ago
  
  4e1a5a34
Aug 13, 2021
- Update Software_installation_ultra2.md · ba17b78c
  ameyner2 authored 3 years ago
  
  ba17b78c
- Fix project > u035/shared. · 43b11fd0
  ameyner2 authored 3 years ago
  
  43b11fd0
- Initial commit of variant prioritization set up. · 01affb5e
  ameyner2 authored 3 years ago
  
  01affb5e
- Update Software_installation_ultra2.md · d667bfff
  ameyner2 authored 3 years ago
  
  d667bfff
- Initial documentation of software installation on ultra2 (sdf-cs1) at... · 537f6c09
  ameyner2 authored 3 years ago
  
  Initial documentation of software installation on ultra2 (sdf-cs1) at EIDF/EPCC. Got as far as executing bcbio base installation.
  537f6c09
Jul 21, 2021
- Moved output cleanup to main pipeline doc · 06a48fb1
  ameyner2 authored 3 years ago
  
  ultra_last_commit
  
  06a48fb1
- Updates to prioritization scripts · 41e4ff2a
  ameyner2 authored 3 years ago
  
  41e4ff2a
- Output cleanup moved to main pipeline SOP · c59efbb0
  ameyner2 authored 3 years ago
  
  c59efbb0
Jul 14, 2021
- Update 18610_run_notes.md · 17704038
  ameyner2 authored 3 years ago
  
  17704038
- Fixed name · e4b56827
  ameyner2 authored 3 years ago
  
  e4b56827
- Update 18170_run_notes.md · 040a60c6
  ameyner2 authored 3 years ago
  
  040a60c6
- Update 17200_ITPR1_mosaic_investigation.md · 14f25b8c
  ameyner2 authored 3 years ago
  
  14f25b8c
- Add new file · 299d4475
  ameyner2 authored 3 years ago
  
  299d4475
Jun 18, 2021
- G2P config for VEP backup · f24de208
  ameyner2 authored 3 years ago
  
  f24de208
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · cbc66047
  ameyner2 authored 3 years ago
  
  cbc66047
- Update to handle different G2P output · e19e28e5
  ameyner2 authored 3 years ago
  
  e19e28e5
- Using version/base project id to group output · ee1d7827
  ameyner2 authored 3 years ago
  
  ee1d7827
- Excluding undetermined index reads · 1c0222e9
  ameyner2 authored 3 years ago
  
  1c0222e9
Jun 15, 2021
- Update 18170_run_notes.md · 4f6275a0
  ameyner2 authored 3 years ago
  
  4f6275a0
- Update 18170_run_notes.md · 71b8bac4
  ameyner2 authored 3 years ago
  
  71b8bac4
- Moved output cleanup step · 47b069fd
  ameyner2 authored 3 years ago
  
  47b069fd
- Update 18170_run_notes.md · 4f156807
  ameyner2 authored 3 years ago
  
  4f156807
- Update 18170_run_notes.md · b84776f3
  ameyner2 authored 3 years ago
  
  b84776f3
- Notes for batch 18957 which has some repeated samples from batch 18840. · 025bc8cc
  ameyner2 authored 3 years ago
  
  025bc8cc
May 03, 2021
- Add new file · 6103ee32
  ameyner2 authored 3 years ago
  
  6103ee32
May 02, 2021
- Fixed typo · 699d2afd
  ameyner2 authored 3 years ago
  
  699d2afd
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 13c72683
  ameyner2 authored 3 years ago
  
  13c72683
- Archive raw reads for project as well · 210f0056
  ameyner2 authored 3 years ago
  
  210f0056
Apr 30, 2021
- Add version to config prep log for CRF data · e1785a53
  ameyner2 authored 3 years ago
  
  e1785a53
- Updated quad scripts · d602e439
  ameyner2 authored 3 years ago
  
  d602e439
Apr 29, 2021
- Prioritization update · 4ddb2bf7
  ameyner2 authored 3 years ago
  
  4ddb2bf7
- Versions of the scripts for Santosh samples · 04064420
  ameyner2 authored 3 years ago
  
  04064420
- Archiving project files under single folder · bafadff4
  ameyner2 authored 3 years ago
  
  bafadff4
Apr 07, 2021
- Fixed qsub commas · 1b3f9df2
  ameyner2 authored 3 years ago
  
  1b3f9df2
- Fixed comma in qsub · 729c19b1
  ameyner2 authored 3 years ago
  
  729c19b1
- Modified to allow for reanalysis on new G2P panel · 743b9fe8
  ameyner2 authored 3 years ago
  
  743b9fe8
- Changed symlink creation to a new temporary folder · fd2160e7
  ameyner2 authored 3 years ago
  
  fd2160e7
- Fixed file path in config · b337bbea
  ameyner2 authored 3 years ago
  
  b337bbea
Mar 23, 2021
- Updated download from EdGe · 16c59414
  ameyner2 authored 4 years ago
  
  16c59414