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--- a/NHS_WES_trio_setup.sh
+++ b/NHS_WES_trio_setup.sh
--- a/add_plate_and_family_id_to_ped.pl
+++ b/add_plate_and_family_id_to_ped.pl
--- a/add_samples_from_previous_CRF_runs.sh
+++ b/add_samples_from_previous_CRF_runs.sh
--- a/add_samples_from_previous_EdGe_runs.sh
+++ b/add_samples_from_previous_EdGe_runs.sh
--- a/bcbio_gnomad_install.sh
+++ b/bcbio_gnomad_install.sh
--- a/check_quad_PED.py
+++ b/check_quad_PED.py
--- a/check_shared_PED.py
+++ b/check_shared_PED.py
--- a/compare_indi_vars_by_version.py
+++ b/compare_indi_vars_by_version.py
--- a/convert_DEC_to_v10.py
+++ b/convert_DEC_to_v10.py
--- a/decipher_NHS_WES_trio.sh
+++ b/decipher_NHS_WES_trio.sh
--- a/delete_BAM.sh
+++ b/delete_BAM.sh
--- a/downstream_setup.sh
+++ b/downstream_setup.sh
--- a/extract_BED_CCDS_DDG2P.py
+++ b/extract_BED_CCDS_DDG2P.py
--- a/extract_solo_FAM_PRO_ID.py
+++ b/extract_solo_FAM_PRO_ID.py
--- a/extract_trio_FAM_PRO_ID.py
+++ b/extract_trio_FAM_PRO_ID.py
--- a/filter_LQ_GT.py
+++ b/filter_LQ_GT.py
--- a/full_process_NHS_WES_trio.sh
+++ b/full_process_NHS_WES_trio.sh
--- a/gather_NHS_WES_aff_probands_results.sh
+++ b/gather_NHS_WES_aff_probands_results.sh
--- a/gather_NHS_WES_quad_results.sh
+++ b/gather_NHS_WES_quad_results.sh
--- a/gather_NHS_WES_trio_results.sh
+++ b/gather_NHS_WES_trio_results.sh
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