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--- a/process_NHS_WES_quad.sh
+++ b/process_NHS_WES_quad.sh
--- a/process_NHS_WES_quad_full.sh
+++ b/process_NHS_WES_quad_full.sh
--- a/process_NHS_WES_trio.sh
+++ b/process_NHS_WES_trio.sh
--- a/process_NHS_WES_trio_before_BAMOUT.sh
+++ b/process_NHS_WES_trio_before_BAMOUT.sh
--- a/process_quad.sh
+++ b/process_quad.sh
--- a/process_shared.sh
+++ b/process_shared.sh
--- a/process_solo.sh
+++ b/process_solo.sh
--- a/process_trio.sh
+++ b/process_trio.sh
--- a/processing_setup.sh
+++ b/processing_setup.sh
--- a/reanalysis_preparation.sh
+++ b/reanalysis_preparation.sh
--- a/run_processing.sh
+++ b/run_processing.sh
--- a/submit_depth_of_coverage_MQ20_BQ20.sh
+++ b/submit_depth_of_coverage_MQ20_BQ20.sh
--- a/submit_downstream.sh
+++ b/submit_downstream.sh
--- a/submit_trio_wes_aspera_download.sh
+++ b/submit_trio_wes_aspera_download.sh
--- a/submit_trio_wes_bcbio.sh
+++ b/submit_trio_wes_bcbio.sh
--- a/submit_trio_wes_cram_compression.sh
+++ b/submit_trio_wes_cram_compression.sh
--- a/submit_trio_wes_family_checksums.sh
+++ b/submit_trio_wes_family_checksums.sh
--- a/submit_trio_wes_lftp_download.sh
+++ b/submit_trio_wes_lftp_download.sh
--- a/submit_trio_wes_project_checksums.sh
+++ b/submit_trio_wes_project_checksums.sh
--- a/submit_trio_wes_wget_download.sh
+++ b/submit_trio_wes_wget_download.sh
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