cluster script changes

scripts/concatOutputLc.sh

@@ -4,9 +4,9 @@ if [ "$#" -ne 1  ]; then
    exit
 fi
 
-
-concatLcFile=$1/lc_concat.txt
-concatPriceFile=$1/price_concat.txt
+cd $1
+concatLcFile=lc_concat.txt
+concatPriceFile=price_concat.txt
 echo "Scenario,Year,Cropland,Pasture,ManForest,UnmanForest,Natural,FertCrop,FertPasture,IrrigCrop,IrrigPasture" > $concatLcFile
 echo "Scenario,Year,Crop,Imports,Exports,Price,Stocks" > $concatPriceFile
 

scripts/scheduleScenarios.sh

@@ -29,8 +29,8 @@ do
 
      jobName=$ensemble"_"$scenario
 
-     echo "qsub -N $jobName /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $ensemble/$scenario"
-     qsub -N $jobName /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $ensemble/$scenario
+     echo "qsub -hold_jid calib -N $jobName /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $ensemble/$scenario"
+     qsub -hold_jid calib -N $jobName /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $ensemble/$scenario
   fi
 done < $filename