doc/Section_commands.txt

doc/compute_displace_atom.txt

doc/create_atoms.txt

doc/delete_atoms.txt

doc/dump.txt

doc/dump_modify.txt

doc/reset_ids.txt

src/atom.h

src/delete_atoms.cpp

src/dump.cpp

src/dump.h

src/read_dump.cpp

src/reset_ids.cpp

src/reset_ids.h