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Swain Lab
aliby
alibylite
Commits
5acefd54
Commit
5acefd54
authored
3 years ago
by
Alán Muñoz
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rename dummy babyrunner
parent
f55531c5
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2 changed files
pcore/pipeline.py
+1
-1
1 addition, 1 deletion
pcore/pipeline.py
scripts/distributed_alan.py
+2
-2
2 additions, 2 deletions
scripts/distributed_alan.py
with
3 additions
and
3 deletions
pcore/pipeline.py
+
1
−
1
View file @
5acefd54
...
...
@@ -16,7 +16,7 @@ from agora.base import ParametersABC, ProcessABC
from
pcore.experiment
import
MetaData
from
pcore.io.omero
import
Dataset
,
Image
from
pcore.haystack
import
initialise_tf
from
pcore.baby_client
import
Dumm
yRunner
from
pcore.baby_client
import
Bab
yRunner
from
pcore.segment
import
Tiler
from
pcore.io.writer
import
TilerWriter
,
BabyWriter
from
pcore.io.signal
import
Signal
...
...
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scripts/distributed_alan.py
+
2
−
2
View file @
5acefd54
...
...
@@ -19,7 +19,7 @@ import operator
from
pcore.experiment
import
MetaData
from
pcore.io.omero
import
Dataset
,
Image
from
pcore.haystack
import
initialise_tf
from
pcore.baby_client
import
Dumm
yRunner
from
pcore.baby_client
import
Bab
yRunner
from
pcore.segment
import
Tiler
from
pcore.io.writer
import
TilerWriter
,
BabyWriter
from
pcore.utils
import
timed
...
...
@@ -79,7 +79,7 @@ def create_pipeline(image_id, **config):
assert
baby_config
is
not
None
# TODO add defaults
tf_version
=
baby_config
.
get
(
"
tf_version
"
,
2
)
session
=
initialise_tf
(
tf_version
)
runner
=
Dumm
yRunner
(
tiler
)
runner
=
Bab
yRunner
(
tiler
)
bwriter
=
BabyWriter
(
filename
)
params
=
Parameters
(
**
exparams_from_meta
(
filename
))
ext
=
Extractor
.
from_tiler
(
params
,
store
=
filename
,
tiler
=
tiler
)
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